Variant report

Variant	rs10881603
Chromosome Location	chr10:91333674-91333675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10881611	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10881612	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185773	0.83[CHB][hapmap]
rs11185777	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11185780	0.87[CHD][hapmap]
rs11185819	1.00[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185820	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12773938	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1926214	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs45510095	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs719909	0.83[CHB][hapmap]
rs7916227	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7924150	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10881603	IFIT1	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328000-91334000	Weak transcription	Fetal Lung	lung
2	chr10:91328000-91334200	Weak transcription	NHLF	lung
3	chr10:91328200-91347200	Weak transcription	HSMM	muscle
4	chr10:91330400-91334000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:91332800-91334800	Enhancers	HepG2	liver
6	chr10:91333200-91334400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:91333200-91339400	Weak transcription	Liver	Liver
8	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
9	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:91333400-91351200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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