Variant report

Variant	rs11185773
Chromosome Location	chr10:91349331-91349332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91349261..91351592-chr10:91402554..91405180,3	MCF-7	breast:
2	chr10:91347329..91350012-chr10:91354291..91355825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1075374	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881608	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881610	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185780	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11185790	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185791	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185792	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185793	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185794	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185795	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185796	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185797	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185798	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185799	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185800	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185801	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185802	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185804	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185806	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185808	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185809	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185810	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185811	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185812	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11185819	0.81[JPT][hapmap]
rs12219790	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12774378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12777243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409360	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1815338	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3824603	0.95[ASN][1000 genomes]
rs4294495	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56160723	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs719909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818709	0.80[AMR][1000 genomes]
rs730287	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7476027	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7905163	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs943125	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91333400-91351200	Weak transcription	Ovary	ovary
2	chr10:91334400-91351000	Weak transcription	NHLF	lung
3	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
4	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
5	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
6	chr10:91335400-91370800	Weak transcription	A549	lung
7	chr10:91335400-91375600	Weak transcription	NH-A	brain
8	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
9	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
10	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:91342200-91352000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:91342400-91352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91342600-91349400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:91343200-91352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
17	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
18	chr10:91343600-91351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:91344000-91351200	Weak transcription	Primary T cells from cord blood	blood
20	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:91344200-91351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:91344400-91351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:91344400-91351400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:91344800-91352000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
26	chr10:91345600-91350600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:91345800-91351200	Weak transcription	Left Ventricle	heart
28	chr10:91346400-91352200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
30	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
31	chr10:91346600-91352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:91346600-91352400	Weak transcription	Brain Germinal Matrix	brain
33	chr10:91346600-91352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:91347000-91349400	Strong transcription	Dnd41	blood
35	chr10:91347000-91351200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:91347200-91349400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:91347200-91349400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:91347600-91349400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:91347800-91352400	Weak transcription	HMEC	breast
41	chr10:91348200-91349400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:91348200-91349400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:91348200-91349400	Enhancers	HSMMtube	muscle
44	chr10:91348200-91351000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:91348400-91349400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:91348400-91349400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:91348400-91349400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr10:91348400-91349400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:91348400-91349400	Genic enhancers	HSMM	muscle
50	chr10:91348400-91350000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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