Variant report

Variant	rs11185799
Chromosome Location	chr10:91377466-91377467
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91375477..91379604-chr10:91402218..91405804,4	K562	blood:
2	chr10:91376900..91378521-chr10:91403843..91405968,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1075374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881607	0.95[ASN][1000 genomes]
rs10881608	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881610	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881611	0.85[ASN][1000 genomes]
rs10881612	0.82[ASN][1000 genomes]
rs11185760	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185773	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11185780	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11185790	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185791	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185792	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185793	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185806	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185809	0.87[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185812	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185819	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11185820	0.80[ASN][1000 genomes]
rs12219790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774378	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12777243	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1409360	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1815338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926214	0.85[ASN][1000 genomes]
rs4294495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45510095	0.82[ASN][1000 genomes]
rs56160723	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs719909	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72818709	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs730287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
7	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
8	chr10:91359400-91393000	Weak transcription	NHEK	skin
9	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:91370000-91380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:91370200-91381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:91371400-91389400	Weak transcription	A549	lung
16	chr10:91371600-91378000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:91371600-91378000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:91371600-91378400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:91371600-91378400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:91371800-91378000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:91371800-91378200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:91371800-91379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:91371800-91380400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:91371800-91389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
28	chr10:91372000-91378600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:91372400-91378200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:91374000-91377600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:91374200-91377600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:91374200-91384400	Weak transcription	Liver	Liver
34	chr10:91374600-91378400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:91375000-91378200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:91376000-91385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
38	chr10:91376400-91377800	Weak transcription	Fetal Thymus	thymus
39	chr10:91376600-91377600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:91377000-91378200	Enhancers	Fetal Heart	heart
41	chr10:91377000-91379400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr10:91377000-91380600	Weak transcription	Dnd41	blood
43	chr10:91377000-91381200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:91377200-91377600	Weak transcription	Right Ventricle	heart
45	chr10:91377200-91385000	Weak transcription	HepG2	liver
46	chr10:91377400-91377800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:91377400-91378400	Enhancers	Left Ventricle	heart

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