Variant report

Variant	rs7905163
Chromosome Location	chr10:91383930-91383931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91381301..91384193-chr10:91403274..91405592,3	K562	blood:
2	chr10:91382704..91385551-chr10:91404108..91405622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1075374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881607	0.94[ASN][1000 genomes]
rs10881608	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881610	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881611	0.85[ASN][1000 genomes]
rs10881612	0.83[ASN][1000 genomes]
rs11185760	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11185773	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11185780	1.00[CEU][hapmap];0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11185790	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185791	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185792	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185800	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185809	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185810	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185811	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11185812	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185819	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs11185820	0.81[ASN][1000 genomes]
rs12219790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12774378	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12777243	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1409360	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926214	0.85[ASN][1000 genomes]
rs4294495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs45510095	0.83[ASN][1000 genomes]
rs56160723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs719909	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818709	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs730287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7476027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943125	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91371400-91389400	Weak transcription	A549	lung
11	chr10:91371800-91389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
15	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91374200-91384400	Weak transcription	Liver	Liver
17	chr10:91376000-91385000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
19	chr10:91377200-91385000	Weak transcription	HepG2	liver
20	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:91381400-91385600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:91381600-91385400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:91381600-91390600	Weak transcription	Fetal Stomach	stomach
24	chr10:91381800-91392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:91382000-91386600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:91383200-91384200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:91383200-91389800	Enhancers	Fetal Heart	heart
28	chr10:91383400-91384000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr10:91383400-91384000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:91383400-91384000	ZNF genes & repeats	Dnd41	blood
31	chr10:91383400-91385000	Enhancers	Left Ventricle	heart
32	chr10:91383400-91385200	Strong transcription	Fetal Intestine Small	intestine
33	chr10:91383400-91385400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:91383600-91384000	Enhancers	Right Ventricle	heart
35	chr10:91383600-91384200	Enhancers	Psoas Muscle	Psoas
36	chr10:91383800-91384000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr10:91383800-91384400	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:91383800-91385800	Weak transcription	Right Atrium	heart
39	chr10:91383800-91392800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:91383800-91392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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