Variant report

Variant	rs7916599
Chromosome Location	chr10:18384452-18384453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11012679	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11012692	0.92[EUR][1000 genomes]
rs11012693	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085228	0.81[AFR][1000 genomes]
rs72780087	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72780090	0.92[ASN][1000 genomes]
rs74120240	1.00[AMR][1000 genomes]
rs7916255	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv818749	chr10:18377343-18392126	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv14927	chr10:18378907-18402738	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18383000-18387200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:18383600-18384800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:18383600-18387000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:18383800-18384600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:18383800-18385200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:18384000-18385000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:18384400-18384600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:18384400-18384800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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