Variant report

Variant	rs7918598
Chromosome Location	chr10:37825015-37825016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508860	0.90[AMR][1000 genomes]
rs11591935	0.90[AMR][1000 genomes]
rs11592992	0.90[AMR][1000 genomes]
rs11595048	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11596009	0.90[AMR][1000 genomes]
rs11596513	0.90[AMR][1000 genomes]
rs11597295	0.90[AMR][1000 genomes]
rs11597342	0.90[AMR][1000 genomes]
rs11599846	0.90[AMR][1000 genomes]
rs1208797	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12262446	0.84[AMR][1000 genomes]
rs17576639	0.90[AMR][1000 genomes]
rs17576786	0.90[AMR][1000 genomes]
rs17660470	0.90[AMR][1000 genomes]
rs17660553	0.90[AMR][1000 genomes]
rs1830613	0.90[AMR][1000 genomes]
rs1985654	0.90[AMR][1000 genomes]
rs1985655	0.90[AMR][1000 genomes]
rs4934592	0.90[AMR][1000 genomes]
rs4934595	0.90[AMR][1000 genomes]
rs4934596	0.90[AMR][1000 genomes]
rs4934893	0.90[AMR][1000 genomes]
rs4934895	0.90[AMR][1000 genomes]
rs4934904	0.90[AMR][1000 genomes]
rs4934905	0.90[AMR][1000 genomes]
rs4934908	0.90[AMR][1000 genomes]
rs4934909	0.90[AMR][1000 genomes]
rs7071116	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv8617	chr10:37815801-37877331	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv437664	chr10:37816510-37840199	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437665	chr10:37816510-37840199	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1813461	chr10:37816684-37860065	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1806900	chr10:37817882-37826492	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1807404	chr10:37817882-37826492	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1809925	chr10:37817882-37826492	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1814661	chr10:37817882-37826492	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3693052	chr10:37818201-37834376	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37823000-37825200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr10:37824000-37826200	Enhancers	HSMM	muscle
3	chr10:37824200-37825600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:37824200-37825600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:37824400-37825200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:37824400-37826200	Enhancers	HSMMtube	muscle
7	chr10:37824600-37826000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:37825000-37825200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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