Variant report

Variant	rs11595048
Chromosome Location	chr10:37842472-37842473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:37835588..37837794-chr10:37842395..37844055,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10508860	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11591935	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11592531	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11592992	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11596009	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11596513	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11597295	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11597342	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11599846	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1208797	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12262446	0.84[AMR][1000 genomes]
rs12783471	1.00[AFR][1000 genomes]
rs1322320	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1742229	0.90[AMR][1000 genomes]
rs17576639	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17576786	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17577243	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17577299	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17660470	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17660553	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17660785	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17660828	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17660840	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1830613	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1985654	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1985655	0.90[AMR][1000 genomes]
rs4934592	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4934595	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934596	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934893	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4934895	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4934904	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934905	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934908	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934909	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4934910	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4934911	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4934913	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7071116	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7918598	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv8617	chr10:37815801-37877331	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1813461	chr10:37816684-37860065	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041584	chr10:37834376-37894260	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv971878	chr10:37836844-37850135	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37842000-37842600	Enhancers	Left Ventricle	heart
2	chr10:37842200-37843000	Weak transcription	Right Atrium	heart

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