Variant report

Variant	rs12783471
Chromosome Location	chr10:38025546-38025547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38022553..38025256-chr10:38025509..38028052,2	MCF-7	breast:

Extended variants
information (count: 259 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs10508860	1.00[AFR][1000 genomes]
rs1148272	1.00[AFR][1000 genomes]
rs1148273	1.00[AFR][1000 genomes]
rs1148274	1.00[AFR][1000 genomes]
rs1148275	1.00[AFR][1000 genomes]
rs1148276	1.00[AFR][1000 genomes]
rs1148277	1.00[AFR][1000 genomes]
rs1148278	1.00[AFR][1000 genomes]
rs1148279	1.00[AFR][1000 genomes]
rs1148280	1.00[AFR][1000 genomes]
rs1148281	1.00[AFR][1000 genomes]
rs1148282	1.00[AFR][1000 genomes]
rs1148283	1.00[AFR][1000 genomes]
rs1148284	1.00[AFR][1000 genomes]
rs1148286	1.00[AFR][1000 genomes]
rs1148288	1.00[AFR][1000 genomes]
rs1148289	1.00[AFR][1000 genomes]
rs1148290	1.00[AFR][1000 genomes]
rs1148292	1.00[AFR][1000 genomes]
rs1148293	1.00[AFR][1000 genomes]
rs1148294	1.00[AFR][1000 genomes]
rs1148295	1.00[AFR][1000 genomes]
rs11591935	1.00[AFR][1000 genomes]
rs11592531	1.00[AFR][1000 genomes]
rs11592992	1.00[AFR][1000 genomes]
rs11593389	1.00[AFR][1000 genomes]
rs11594707	1.00[AFR][1000 genomes]
rs11595048	1.00[AFR][1000 genomes]
rs11595596	1.00[AFR][1000 genomes]
rs11596009	1.00[AFR][1000 genomes]
rs11596513	1.00[AFR][1000 genomes]
rs11597295	1.00[AFR][1000 genomes]
rs11597342	1.00[AFR][1000 genomes]
rs11597806	1.00[AFR][1000 genomes]
rs11599846	1.00[AFR][1000 genomes]
rs1208549	1.00[AFR][1000 genomes]
rs1208550	1.00[AFR][1000 genomes]
rs1208551	1.00[AFR][1000 genomes]
rs1208553	1.00[AFR][1000 genomes]
rs1208557	1.00[AFR][1000 genomes]
rs1208558	1.00[AFR][1000 genomes]
rs1208563	1.00[AFR][1000 genomes]
rs1208564	1.00[AFR][1000 genomes]
rs1208565	1.00[AFR][1000 genomes]
rs1208566	1.00[AFR][1000 genomes]
rs1208567	1.00[AFR][1000 genomes]
rs1208568	1.00[AFR][1000 genomes]
rs1208569	1.00[AFR][1000 genomes]
rs1208571	1.00[AFR][1000 genomes]
rs1208574	1.00[AFR][1000 genomes]
rs1208577	1.00[AFR][1000 genomes]
rs1208579	1.00[AFR][1000 genomes]
rs1208581	1.00[AFR][1000 genomes]
rs1208583	1.00[AFR][1000 genomes]
rs1208584	1.00[AFR][1000 genomes]
rs1208586	1.00[AFR][1000 genomes]
rs1208589	1.00[AFR][1000 genomes]
rs1208590	1.00[AFR][1000 genomes]
rs1208593	1.00[AFR][1000 genomes]
rs1208594	1.00[AFR][1000 genomes]
rs1208610	1.00[AFR][1000 genomes]
rs1208612	1.00[AFR][1000 genomes]
rs1208613	1.00[AFR][1000 genomes]
rs1208614	1.00[AFR][1000 genomes]
rs1208615	1.00[AFR][1000 genomes]
rs1208616	1.00[AFR][1000 genomes]
rs1208620	1.00[AFR][1000 genomes]
rs1208622	1.00[AFR][1000 genomes]
rs1208623	1.00[AFR][1000 genomes]
rs1208625	1.00[AFR][1000 genomes]
rs1208626	1.00[AFR][1000 genomes]
rs1208628	1.00[AFR][1000 genomes]
rs1208629	1.00[AFR][1000 genomes]
rs1208631	1.00[AFR][1000 genomes]
rs1208632	1.00[AFR][1000 genomes]
rs1208634	1.00[AFR][1000 genomes]
rs1208635	1.00[AFR][1000 genomes]
rs1208636	1.00[AFR][1000 genomes]
rs1208639	1.00[AFR][1000 genomes]
rs1208642	1.00[AFR][1000 genomes]
rs1208644	1.00[AFR][1000 genomes]
rs1208647	1.00[AFR][1000 genomes]
rs1208648	1.00[AFR][1000 genomes]
rs1208649	1.00[AFR][1000 genomes]
rs1208650	1.00[AFR][1000 genomes]
rs1208659	1.00[AFR][1000 genomes]
rs1208661	1.00[AFR][1000 genomes]
rs1208662	1.00[AFR][1000 genomes]
rs1208664	1.00[AFR][1000 genomes]
rs1208666	1.00[AFR][1000 genomes]
rs1208667	1.00[AFR][1000 genomes]
rs1208668	1.00[AFR][1000 genomes]
rs1208669	1.00[AFR][1000 genomes]
rs1208671	1.00[AFR][1000 genomes]
rs1208672	1.00[AFR][1000 genomes]
rs1208673	1.00[AFR][1000 genomes]
rs1208674	1.00[AFR][1000 genomes]
rs1208676	1.00[AFR][1000 genomes]
rs1208677	1.00[AFR][1000 genomes]
rs1208678	1.00[AFR][1000 genomes]
rs1208679	1.00[AFR][1000 genomes]
rs1208680	1.00[AFR][1000 genomes]
rs1208682	1.00[AFR][1000 genomes]
rs1208685	1.00[AFR][1000 genomes]
rs1208686	1.00[AFR][1000 genomes]
rs1208687	1.00[AFR][1000 genomes]
rs1208688	1.00[AFR][1000 genomes]
rs1208690	1.00[AFR][1000 genomes]
rs1208692	1.00[AFR][1000 genomes]
rs1208694	1.00[AFR][1000 genomes]
rs1208696	1.00[AFR][1000 genomes]
rs1208698	1.00[AFR][1000 genomes]
rs1208699	1.00[AFR][1000 genomes]
rs1208701	1.00[AFR][1000 genomes]
rs1208702	1.00[AFR][1000 genomes]
rs1208703	1.00[AFR][1000 genomes]
rs1208704	1.00[AFR][1000 genomes]
rs1208705	1.00[AFR][1000 genomes]
rs1208706	1.00[AFR][1000 genomes]
rs1208707	1.00[AFR][1000 genomes]
rs1208709	1.00[AFR][1000 genomes]
rs1208710	1.00[AFR][1000 genomes]
rs1208711	1.00[AFR][1000 genomes]
rs1208712	1.00[AFR][1000 genomes]
rs1208715	1.00[AFR][1000 genomes]
rs1208717	1.00[AFR][1000 genomes]
rs1208718	1.00[AFR][1000 genomes]
rs1208719	1.00[AFR][1000 genomes]
rs1208720	1.00[AFR][1000 genomes]
rs1208721	1.00[AFR][1000 genomes]
rs1208722	1.00[AFR][1000 genomes]
rs1208723	1.00[AFR][1000 genomes]
rs1208724	1.00[AFR][1000 genomes]
rs1208725	1.00[AFR][1000 genomes]
rs1208726	1.00[AFR][1000 genomes]
rs1208727	1.00[AFR][1000 genomes]
rs1208728	1.00[AFR][1000 genomes]
rs1208729	1.00[AFR][1000 genomes]
rs1208730	1.00[AFR][1000 genomes]
rs1208731	1.00[AFR][1000 genomes]
rs1208764	1.00[AFR][1000 genomes]
rs1208765	1.00[AFR][1000 genomes]
rs1208766	1.00[AFR][1000 genomes]
rs1208768	1.00[AFR][1000 genomes]
rs1208771	1.00[AFR][1000 genomes]
rs1208772	1.00[AFR][1000 genomes]
rs1208774	1.00[AFR][1000 genomes]
rs1208776	1.00[AFR][1000 genomes]
rs1208777	1.00[AFR][1000 genomes]
rs1208778	1.00[AFR][1000 genomes]
rs1209424	1.00[AFR][1000 genomes]
rs1209748	1.00[AFR][1000 genomes]
rs1210991	1.00[AFR][1000 genomes]
rs1211422	1.00[AFR][1000 genomes]
rs1211708	1.00[AFR][1000 genomes]
rs1212107	1.00[AFR][1000 genomes]
rs1322315	1.00[AFR][1000 genomes]
rs1322320	1.00[AFR][1000 genomes]
rs1322321	1.00[AFR][1000 genomes]
rs1361894	1.00[AFR][1000 genomes]
rs1419246	1.00[AFR][1000 genomes]
rs1592338	1.00[AFR][1000 genomes]
rs1618829	1.00[AFR][1000 genomes]
rs1620874	1.00[AFR][1000 genomes]
rs1620971	1.00[AFR][1000 genomes]
rs1621236	1.00[AFR][1000 genomes]
rs1735601	1.00[AFR][1000 genomes]
rs1735610	1.00[AFR][1000 genomes]
rs1735623	1.00[AFR][1000 genomes]
rs1735626	1.00[AFR][1000 genomes]
rs1735628	1.00[AFR][1000 genomes]
rs1735631	1.00[AFR][1000 genomes]
rs1735634	1.00[AFR][1000 genomes]
rs1735635	1.00[AFR][1000 genomes]
rs1735636	1.00[AFR][1000 genomes]
rs1735637	1.00[AFR][1000 genomes]
rs1742230	1.00[AFR][1000 genomes]
rs1742231	1.00[AFR][1000 genomes]
rs1742232	1.00[AFR][1000 genomes]
rs1742233	1.00[AFR][1000 genomes]
rs1742234	1.00[AFR][1000 genomes]
rs1742236	1.00[AFR][1000 genomes]
rs1742237	1.00[AFR][1000 genomes]
rs1742238	1.00[AFR][1000 genomes]
rs1742240	1.00[AFR][1000 genomes]
rs1742242	1.00[AFR][1000 genomes]
rs1743811	1.00[AFR][1000 genomes]
rs1743813	1.00[AFR][1000 genomes]
rs17576639	1.00[AFR][1000 genomes]
rs17576786	1.00[AFR][1000 genomes]
rs17577243	1.00[AFR][1000 genomes]
rs17577299	1.00[AFR][1000 genomes]
rs17591524	1.00[AFR][1000 genomes]
rs17607259	1.00[AFR][1000 genomes]
rs17660470	1.00[AFR][1000 genomes]
rs17660553	1.00[AFR][1000 genomes]
rs17660785	1.00[AFR][1000 genomes]
rs17660828	1.00[AFR][1000 genomes]
rs17660840	1.00[AFR][1000 genomes]
rs1779009	1.00[AFR][1000 genomes]
rs1779018	1.00[AFR][1000 genomes]
rs1779019	1.00[AFR][1000 genomes]
rs1779020	1.00[AFR][1000 genomes]
rs1779021	1.00[AFR][1000 genomes]
rs1779022	1.00[AFR][1000 genomes]
rs1779025	1.00[AFR][1000 genomes]
rs1779028	1.00[AFR][1000 genomes]
rs1779029	1.00[AFR][1000 genomes]
rs1779030	1.00[AFR][1000 genomes]
rs1779031	1.00[AFR][1000 genomes]
rs1779036	1.00[AFR][1000 genomes]
rs1779047	1.00[AFR][1000 genomes]
rs1779048	1.00[AFR][1000 genomes]
rs1779050	1.00[AFR][1000 genomes]
rs1779051	1.00[AFR][1000 genomes]
rs1779052	1.00[AFR][1000 genomes]
rs1779064	1.00[AFR][1000 genomes]
rs1779065	1.00[AFR][1000 genomes]
rs1779072	1.00[AFR][1000 genomes]
rs1779076	1.00[AFR][1000 genomes]
rs1779078	1.00[AFR][1000 genomes]
rs1779089	1.00[AFR][1000 genomes]
rs1779132	1.00[AFR][1000 genomes]
rs1779151	1.00[AFR][1000 genomes]
rs1779155	1.00[AFR][1000 genomes]
rs1830613	1.00[AFR][1000 genomes]
rs1985654	1.00[AFR][1000 genomes]
rs2753875	1.00[AFR][1000 genomes]
rs3117562	1.00[AFR][1000 genomes]
rs3117563	1.00[AFR][1000 genomes]
rs4934592	1.00[AFR][1000 genomes]
rs4934595	1.00[AFR][1000 genomes]
rs4934596	1.00[AFR][1000 genomes]
rs4934893	1.00[AFR][1000 genomes]
rs4934895	1.00[AFR][1000 genomes]
rs4934904	1.00[AFR][1000 genomes]
rs4934905	1.00[AFR][1000 genomes]
rs4934908	1.00[AFR][1000 genomes]
rs4934909	1.00[AFR][1000 genomes]
rs4934910	1.00[AFR][1000 genomes]
rs4934911	1.00[AFR][1000 genomes]
rs4934913	1.00[AFR][1000 genomes]
rs58001845	1.00[AFR][1000 genomes]
rs61735514	1.00[AFR][1000 genomes]
rs7071116	1.00[AFR][1000 genomes]
rs7077782	1.00[AFR][1000 genomes]
rs7393766	1.00[AFR][1000 genomes]
rs743100	1.00[AFR][1000 genomes]
rs767264	1.00[AFR][1000 genomes]
rs7916515	1.00[AFR][1000 genomes]
rs874860	1.00[AFR][1000 genomes]
rs9418281	1.00[AFR][1000 genomes]
rs9418285	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947607	chr10:38021929-38040760	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38022200-38037000	Weak transcription	HSMM	muscle
2	chr10:38023400-38026000	Enhancers	Placenta	Placenta

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