Variant report

Variant	rs7920052
Chromosome Location	chr10:96400052-96400053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10430657	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736086	0.89[YRI][hapmap]
rs10882476	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10882487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187953	0.95[JPT][hapmap]
rs11187968	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11187969	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11187971	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11187974	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11188044	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188066	0.89[ASN][1000 genomes]
rs11498700	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11527882	0.95[JPT][hapmap]
rs11528090	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12220941	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4388808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4917612	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs68060620	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093613	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96393800-96403400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:96398200-96401600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:96399400-96400400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96399600-96400200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:96399800-96400200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:96400000-96400400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr10:96400000-96400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:96400000-96400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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