Variant report

Variant	rs11187953
Chromosome Location	chr10:96206693-96206694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96205685..96208642-chr10:96211882..96213579,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882476	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11187933	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187968	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187969	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11187971	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187974	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187994	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188000	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11527882	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11528075	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12220941	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2265045	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2764379	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs495896	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7093613	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7901625	0.81[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
5	chr10:96199200-96211200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
7	chr10:96199400-96207000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:96199400-96211200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
11	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
13	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
14	chr10:96200200-96211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
16	chr10:96200600-96211200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:96202400-96210000	Weak transcription	Fetal Lung	lung
19	chr10:96203000-96218600	Weak transcription	Ovary	ovary
20	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:96203200-96215400	Weak transcription	Fetal Intestine Small	intestine
22	chr10:96203400-96212000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:96203600-96211400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:96203800-96211200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:96203800-96211200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:96203800-96211400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:96203800-96217200	Weak transcription	HepG2	liver
30	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:96204000-96221000	Weak transcription	Liver	Liver
32	chr10:96204200-96210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:96204200-96211200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:96204200-96212000	Weak transcription	Brain Anterior Caudate	brain
35	chr10:96204200-96213400	Weak transcription	A549	lung
36	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr10:96206200-96207000	Weak transcription	HSMM	muscle
38	chr10:96206200-96218000	Weak transcription	Rectal Mucosa Donor 29	rectum

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