Variant report

Variant	rs7901625
Chromosome Location	chr10:96189900-96189901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11187933	0.90[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187953	0.81[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187968	0.90[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187971	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11187974	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187994	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188000	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188001	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11527882	0.90[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11528075	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12220941	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2265045	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2764379	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs495896	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9420636	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:96183000-96191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96184600-96191800	Weak transcription	HSMMtube	muscle
5	chr10:96184800-96199200	Weak transcription	Gastric	stomach
6	chr10:96187400-96190200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:96187400-96190200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:96187800-96190800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:96187800-96190800	Enhancers	Adipose Nuclei	Adipose
10	chr10:96187800-96190800	Enhancers	Osteobl	bone
11	chr10:96188000-96190000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:96188200-96190000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:96188200-96190000	Enhancers	HSMM	muscle
14	chr10:96188200-96190600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:96188400-96194800	Weak transcription	Brain Anterior Caudate	brain
16	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
17	chr10:96188600-96190400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:96188600-96190800	Enhancers	Fetal Lung	lung
19	chr10:96188600-96194600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:96188800-96190800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:96188800-96190800	Weak transcription	Right Atrium	heart
22	chr10:96188800-96191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:96188800-96194400	Weak transcription	Left Ventricle	heart
24	chr10:96189000-96191000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:96189200-96190000	Enhancers	Fetal Muscle Trunk	muscle
26	chr10:96189400-96190400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:96189400-96190800	Enhancers	NHDF-Ad	bronchial
28	chr10:96189600-96190000	Enhancers	Esophagus	oesophagus
29	chr10:96189600-96190000	Enhancers	Pancreas	Pancrea
30	chr10:96189600-96190000	Enhancers	Psoas Muscle	Psoas
31	chr10:96189600-96190400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:96189600-96190600	Enhancers	NHLF	lung
33	chr10:96189600-96193800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:96189800-96190200	Weak transcription	Brain Substantia Nigra	brain
35	chr10:96189800-96192200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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