Variant report

Variant	rs11187933
Chromosome Location	chr10:96176376-96176377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96174854..96177531-chr10:96183896..96185905,2	MCF-7	breast:
2	chr10:96162368..96164918-chr10:96174079..96176855,3	K562	blood:
3	chr10:96170708..96172443-chr10:96175266..96177548,2	MCF-7	breast:
4	chr10:96171854..96174293-chr10:96175248..96177141,2	K562	blood:
5	chr10:96162891..96164490-chr10:96175616..96177129,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882476	0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11187953	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187968	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187969	0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs11187971	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11187974	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11187994	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188000	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11527882	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11528075	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12220941	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2265045	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2764379	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs495896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093613	0.82[ASW][hapmap];0.84[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs7901625	0.90[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9420636	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11187933	ENTPD1	cis	parietal	SCAN
rs11187933	SCARNA3	trans	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96163800-96184400	Weak transcription	Gastric	stomach
2	chr10:96164600-96180000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96164800-96182400	Weak transcription	Lung	lung
4	chr10:96164800-96188200	Weak transcription	Right Atrium	heart
5	chr10:96165600-96180600	Weak transcription	Left Ventricle	heart
6	chr10:96169400-96179200	Weak transcription	Pancreas	Pancrea
7	chr10:96169400-96183800	Weak transcription	HSMM	muscle
8	chr10:96171600-96188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:96171800-96183200	Weak transcription	Psoas Muscle	Psoas
10	chr10:96171800-96198200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:96172600-96176800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:96173400-96176800	Weak transcription	Adipose Nuclei	Adipose
13	chr10:96173400-96182600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:96173400-96182600	Weak transcription	Osteobl	bone
15	chr10:96173400-96183000	Weak transcription	HSMMtube	muscle
16	chr10:96173400-96183400	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:96173400-96188400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:96173600-96190200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:96173800-96183000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:96174200-96176600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:96175000-96177600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:96175400-96176600	Enhancers	Brain Hippocampus Middle	brain
23	chr10:96175600-96177200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr10:96175800-96176400	Enhancers	Brain Substantia Nigra	brain
25	chr10:96175800-96176600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:96175800-96176800	Enhancers	Ovary	ovary
27	chr10:96175800-96177000	Enhancers	HMEC	breast
28	chr10:96175800-96177200	Enhancers	Brain Angular Gyrus	brain
29	chr10:96175800-96177400	Enhancers	Brain Anterior Caudate	brain
30	chr10:96175800-96177600	Enhancers	Fetal Kidney	kidney
31	chr10:96176000-96176800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:96176000-96176800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:96176000-96177000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:96176000-96182600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:96176200-96176400	Enhancers	Fetal Lung	lung
36	chr10:96176200-96181000	Weak transcription	Brain Cingulate Gyrus	brain

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