Variant report

Variant	rs792297
Chromosome Location	chr13:95413967-95413968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1189268	0.96[ASN][1000 genomes]
rs1203222	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1212995	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12868463	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1408647	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17196401	0.96[ASN][1000 genomes]
rs2209074	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs701607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7328165	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7329702	0.87[ASN][1000 genomes]
rs792299	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9590073	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95412800-95414400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr13:95412800-95414600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:95413000-95414200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:95413200-95414000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:95413200-95414200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:95413200-95414600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:95413600-95414000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr13:95413600-95414200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:95413800-95414000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:95413800-95414200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:95413800-95414200	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr13:95413800-95415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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