Variant report

Variant	rs1189268
Chromosome Location	chr13:95423154-95423155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1203222	0.97[ASN][1000 genomes]
rs1212995	0.98[ASN][1000 genomes]
rs12855777	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12868463	0.87[ASN][1000 genomes]
rs12874620	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1408647	0.98[ASN][1000 genomes]
rs17196401	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209074	0.93[ASN][1000 genomes]
rs34310240	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35914853	0.85[EUR][1000 genomes]
rs701607	0.98[ASN][1000 genomes]
rs7329702	0.86[ASN][1000 genomes]
rs751806	0.83[EUR][1000 genomes]
rs792290	0.83[AFR][1000 genomes]
rs792292	0.85[AFR][1000 genomes]
rs792297	0.96[ASN][1000 genomes]
rs792299	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763049	chr13:95414554-95445266	Enhancers Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95422600-95431800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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