Variant report

Variant	rs12874620
Chromosome Location	chr13:95401218-95401219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070096	0.81[ASN][1000 genomes]
rs1109422	0.90[ASN][1000 genomes]
rs1189268	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12853576	0.90[ASN][1000 genomes]
rs12855777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12865910	0.90[ASN][1000 genomes]
rs12867959	0.82[ASN][1000 genomes]
rs1574536	0.88[ASN][1000 genomes]
rs17196401	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34310240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35914853	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7328165	0.93[ASN][1000 genomes]
rs751806	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs792299	0.84[CEU][hapmap]
rs9590073	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12874620	SOX21	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95400800-95401800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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