Variant report

Variant	rs35914853
Chromosome Location	chr13:95379330-95379331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11070096	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1109422	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1189268	0.85[EUR][1000 genomes]
rs12853576	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12855777	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12865910	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12867959	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12874620	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1574536	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17196401	0.85[EUR][1000 genomes]
rs34310240	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7328165	0.84[ASN][1000 genomes]
rs751806	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590073	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1054343	chr13:95362727-95395486	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95379200-95383200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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