Variant report

Variant	rs7924201
Chromosome Location	chr10:44456029-44456030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10899954	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899955	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899956	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899957	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11238782	0.89[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11238783	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11528455	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12359058	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085797	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948800	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66887775	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7088951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898549	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898551	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44452400-44456600	Weak transcription	Right Atrium	heart
3	chr10:44453000-44460200	Enhancers	Ovary	ovary
4	chr10:44454600-44456200	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr10:44454600-44456400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:44454600-44457200	Weak transcription	Spleen	Spleen
7	chr10:44455000-44457200	Weak transcription	Left Ventricle	heart
8	chr10:44455000-44460800	Weak transcription	Aorta	Aorta
9	chr10:44455200-44456400	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44455400-44456200	Enhancers	Lung	lung
11	chr10:44455400-44456200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:44455400-44456600	Weak transcription	Fetal Kidney	kidney
13	chr10:44455600-44462000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:44455800-44460800	Weak transcription	Fetal Heart	heart
15	chr10:44456000-44456200	Enhancers	Right Ventricle	heart
16	chr10:44456000-44457000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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