Variant report

Variant	rs898549
Chromosome Location	chr10:44458714-44458715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44453236..44456147-chr10:44456397..44460102,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10899954	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899955	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899957	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238782	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.90[ASN][1000 genomes]
rs11238783	0.84[ASN][1000 genomes]
rs11528455	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12359058	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2085797	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948800	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66887775	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088951	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7924201	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898551	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach
2	chr10:44453000-44460200	Enhancers	Ovary	ovary
3	chr10:44455000-44460800	Weak transcription	Aorta	Aorta
4	chr10:44455600-44462000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:44455800-44460800	Weak transcription	Fetal Heart	heart
6	chr10:44456200-44459400	Weak transcription	Right Ventricle	heart
7	chr10:44456400-44459800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:44456600-44459800	Enhancers	Pancreas	Pancrea
9	chr10:44456600-44461600	Enhancers	Fetal Kidney	kidney
10	chr10:44456800-44459200	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:44457000-44459200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:44457200-44461200	Enhancers	Fetal Stomach	stomach
13	chr10:44457400-44459600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44457600-44459000	Weak transcription	Right Atrium	heart
15	chr10:44457600-44459400	Weak transcription	Left Ventricle	heart
16	chr10:44457600-44460000	Weak transcription	Osteobl	bone
17	chr10:44457800-44459000	Enhancers	NHDF-Ad	bronchial
18	chr10:44457800-44459200	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:44457800-44459200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:44458000-44459800	Enhancers	Colon Smooth Muscle	Colon
21	chr10:44458200-44458800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:44458200-44459000	Enhancers	Fetal Lung	lung
23	chr10:44458200-44459200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:44458200-44459200	Enhancers	NHLF	lung
25	chr10:44458200-44459600	Weak transcription	Spleen	Spleen
26	chr10:44458200-44461400	Weak transcription	Lung	lung
27	chr10:44458400-44458800	Weak transcription	Colonic Mucosa	Colon
28	chr10:44458400-44459600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:44458400-44459600	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr10:44458600-44459600	Weak transcription	Adipose Nuclei	Adipose

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