Variant report

Variant	rs79299660
Chromosome Location	chr12:121422152-121422153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr12:121421472-121423081	A549	lung:	n/a	n/a
2	FOSL2	chr12:121421836-121422771	A549	lung:	n/a	n/a
3	POLR2A	chr12:121421557-121422770	HepG2	liver:	n/a	n/a
4	SP1	chr12:121421449-121422781	A549	lung:	n/a	chr12:121422542-121422551 chr12:121422542-121422552 chr12:121422541-121422553
5	HEY1	chr12:121421995-121422550	HepG2	liver:	n/a	n/a
6	POLR2A	chr12:121422058-121422606	HepG2	liver:	n/a	n/a
7	EP300	chr12:121422149-121422652	HepG2	liver:	n/a	chr12:121422537-121422553
8	GATA3	chr12:121421982-121422855	A549	lung:	n/a	n/a
9	MYBL2	chr12:121421602-121422792	HepG2	liver:	n/a	n/a
10	MAX	chr12:121421541-121422842	A549	lung:	n/a	n/a
11	EP300	chr12:121421534-121422739	A549	lung:	n/a	chr12:121422537-121422553
12	POLR2A	chr12:121421839-121422680	HepG2	liver:	n/a	n/a
13	SP1	chr12:121421465-121422815	A549	lung:	n/a	chr12:121422542-121422551 chr12:121422542-121422552 chr12:121422541-121422553
14	REST	chr12:121422151-121422492	A549	lung:	n/a	n/a
15	RXRA	chr12:121422138-121422559	HepG2	liver:	n/a	n/a
16	GATA3	chr12:121422106-121422577	MCF-7	breast:	n/a	n/a
17	MAZ	chr12:121422057-121422701	HepG2	liver:	n/a	n/a
18	REST	chr12:121421536-121422866	A549	lung:	n/a	n/a
19	GATA3	chr12:121422026-121422703	A549	lung:	n/a	n/a
20	MYBL2	chr12:121421942-121422836	HepG2	liver:	n/a	n/a
21	NR3C1	chr12:121422148-121422599	A549	lung:	n/a	chr12:121422509-121422522
22	HNF4A	chr12:121422130-121422633	HepG2	liver:	n/a	chr12:121422418-121422432 chr12:121422419-121422431 chr12:121422418-121422426 chr12:121422417-121422432 chr12:121422418-121422432 chr12:121422417-121422432 chr12:121422418-121422431 chr12:121422417-121422425 chr12:121422417-121422432 chr12:121422419-121422431 chr12:121422417-121422432 chr12:121422417-121422432
23	ELF1	chr12:121422079-121422711	A549	lung:	n/a	n/a
24	FOXA2	chr12:121422058-121422666	A549	lung:	n/a	n/a
25	NR3C1	chr12:121422126-121422619	A549	lung:	n/a	chr12:121422509-121422522
26	EP300	chr12:121421528-121422690	A549	lung:	n/a	chr12:121422537-121422553
27	SP1	chr12:121422121-121422715	HepG2	liver:	n/a	chr12:121422542-121422551 chr12:121422542-121422552 chr12:121422541-121422553
28	HNF4A	chr12:121422140-121422749	HepG2	liver:	n/a	chr12:121422418-121422432 chr12:121422419-121422431 chr12:121422418-121422426 chr12:121422417-121422432 chr12:121422418-121422432 chr12:121422417-121422432 chr12:121422418-121422431 chr12:121422417-121422425 chr12:121422417-121422432 chr12:121422419-121422431 chr12:121422417-121422432 chr12:121422417-121422432
29	EP300	chr12:121422138-121422572	HepG2	liver:	n/a	chr12:121422537-121422553

No.	Distal block	Cell Line	Cell type
1	chr12:121412159..121414001-chr12:121420552..121422609,2	MCF-7	breast:
2	chr12:121421859..121423940-chr12:121426161..121428350,2	K562	blood:
3	chr12:120803152..120806050-chr12:121419474..121422270,2	K562	blood:

Variant related genes	Relation type
HNF1A-AS1	TF binding region
ENSG00000135097	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv3357747	chr12:121405281-121427388	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1037195	chr12:121408540-121470375	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv1039216	chr12:121421701-121538491	Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121409600-121422200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121418600-121422200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:121418600-121441000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:121418800-121422200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:121418800-121422200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:121418800-121422200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr12:121418800-121431800	Weak transcription	Fetal Stomach	stomach
8	chr12:121418800-121439400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:121419200-121431600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:121419400-121422200	Weak transcription	Fetal Lung	lung
11	chr12:121419400-121422200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr12:121419400-121423400	Enhancers	Stomach Mucosa	stomach
13	chr12:121419600-121424200	Genic enhancers	Fetal Intestine Small	intestine
14	chr12:121419600-121441000	Weak transcription	Small Intestine	intestine
15	chr12:121419800-121429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:121421000-121422600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:121421200-121422400	Enhancers	Duodenum Mucosa	Duodenum
18	chr12:121421200-121426000	Weak transcription	Gastric	stomach
19	chr12:121421200-121426400	Weak transcription	Pancreas	Pancrea
20	chr12:121421600-121422600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:121421600-121422600	Enhancers	Fetal Intestine Large	intestine
22	chr12:121421800-121422200	Enhancers	Fetal Kidney	kidney
23	chr12:121421800-121422400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr12:121421800-121422600	Flanking Active TSS	Liver	Liver
25	chr12:121421800-121422600	Flanking Active TSS	A549	lung
26	chr12:121421800-121422600	Flanking Active TSS	HepG2	liver
27	chr12:121422000-121422400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr12:121422000-121422400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr12:121422000-121422400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr12:121422000-121422400	Enhancers	GM12878-XiMat	blood
31	chr12:121422000-121422600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr12:121422000-121422600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:121422000-121422600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr12:121422000-121422800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr12:121422000-121423000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:121422000-121423400	Enhancers	Colonic Mucosa	Colon

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