Variant report

Variant	rs79323513
Chromosome Location	chr22:31744214-31744215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:31739924-31744267	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31738670..31747056-chr22:31790500..31799012,36	MCF-7	breast:
2	chr22:31737798..31746418-chr22:31793074..31801662,34	MCF-7	breast:
3	chr10:74033244..74035559-chr22:31742440..31745127,2	MCF-7	breast:
4	chr22:31742672..31744282-chr22:31844664..31847017,2	MCF-7	breast:
5	chr22:31683915..31694680-chr22:31733392..31744713,34	MCF-7	breast:
6	chr22:31602004..31608593-chr22:31739507..31744494,7	MCF-7	breast:
7	chr22:31696471..31699232-chr22:31743755..31746050,2	MCF-7	breast:

No data

Variant related genes	Relation type
PATZ1	TF binding region
ENSG00000228839	Chromatin interaction
ENSG00000185721	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000100100	Chromatin interaction
ENSG00000182541	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31744400	Enhancers	Pancreas	Pancrea
2	chr22:31744000-31744800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:31744000-31745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr22:31744000-31745000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:31744000-31745000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:31744000-31745800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr22:31744000-31746000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:31744000-31746000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr22:31744000-31746200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:31744000-31746200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr22:31744000-31746200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:31744000-31746200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr22:31744000-31746200	Weak transcription	A549	lung
14	chr22:31744000-31746600	Weak transcription	Fetal Lung	lung
15	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
16	chr22:31744200-31744600	Weak transcription	Colonic Mucosa	Colon
17	chr22:31744200-31744800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr22:31744200-31745000	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:31744200-31745000	Enhancers	Dnd41	blood
20	chr22:31744200-31745000	Enhancers	HepG2	liver
21	chr22:31744200-31745800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr22:31744200-31746000	Weak transcription	HSMMtube	muscle
23	chr22:31744200-31746400	Weak transcription	Liver	Liver
24	chr22:31744200-31746400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr22:31744200-31746400	Weak transcription	Fetal Heart	heart
26	chr22:31744200-31746400	Weak transcription	Fetal Stomach	stomach
27	chr22:31744200-31746600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr22:31744200-31748400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr22:31744200-31750400	Weak transcription	Spleen	Spleen

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