Variant report

Variant	rs7934239
Chromosome Location	chr11:104918517-104918518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:104917801-104918523	HepG2	liver:	n/a	n/a
2	FOS	chr11:104917668-104918768	HUVEC	blood vessel:	n/a	chr11:104918680-104918692 chr11:104918128-104918135 chr11:104917968-104917978 chr11:104917967-104917979 chr11:104917968-104917978 chr11:104918127-104918135 chr11:104918125-104918136 chr11:104917969-104917977
3	MYBL2	chr11:104917734-104918579	HepG2	liver:	n/a	n/a
4	GATA3	chr11:104917571-104918585	A549	lung:	n/a	chr11:104917718-104917728
5	NFIC	chr11:104917811-104918543	HepG2	liver:	n/a	n/a
6	RCOR1	chr11:104917200-104918570	IMR90	lung:	n/a	n/a
7	FOXA2	chr11:104917624-104918591	HepG2	liver:	n/a	chr11:104917944-104917956
8	TCF12	chr11:104917543-104918521	A549	lung:	n/a	n/a

Variant related genes	Relation type
CARD16	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11604437	0.87[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181174	1.00[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs45483194	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45524138	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45581634	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs504054	0.82[YRI][hapmap]
rs505901	0.82[YRI][hapmap]
rs55768924	0.96[EUR][1000 genomes]
rs55851817	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56046641	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs572687	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv517089	chr11:104915563-104930676	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
13	nsv470	chr11:104916361-104961230	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104912600-104920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:104915800-104918600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:104915800-104920400	Enhancers	HepG2	liver
4	chr11:104916200-104920200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:104916400-104918600	Enhancers	Osteobl	bone
6	chr11:104916400-104919800	Enhancers	Hela-S3	cervix
7	chr11:104916800-104918800	Enhancers	NHDF-Ad	bronchial
8	chr11:104916800-104920400	Weak transcription	Small Intestine	intestine
9	chr11:104916800-104924400	Weak transcription	Left Ventricle	heart
10	chr11:104917200-104919000	Enhancers	Colon Smooth Muscle	Colon
11	chr11:104918000-104918600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:104918000-104920200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:104918000-104922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:104918200-104918600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:104918200-104918600	Enhancers	Adipose Nuclei	Adipose
16	chr11:104918200-104920000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:104918200-104920000	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:104918200-104921000	Weak transcription	Gastric	stomach
19	chr11:104918200-104925200	Weak transcription	Ovary	ovary
20	chr11:104918400-104918600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:104918400-104918600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:104918400-104919600	Enhancers	HUVEC	blood vessel
23	chr11:104918400-104920000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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