Variant report

Variant	rs7934876
Chromosome Location	chr11:8413601-8413602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8405491..8409851-chr11:8412424..8416034,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11041903	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11826312	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827424	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11827954	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828529	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577458	1.00[ASN][1000 genomes]
rs57125396	1.00[ASN][1000 genomes]
rs57577868	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58650381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60037611	1.00[ASN][1000 genomes]
rs61142266	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61570828	0.94[ASN][1000 genomes]
rs7111218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114156	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114460	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114977	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116588	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7123919	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124356	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125131	1.00[ASN][1000 genomes]
rs7126521	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs73402058	1.00[ASN][1000 genomes]
rs73402059	1.00[ASN][1000 genomes]
rs73402067	1.00[ASN][1000 genomes]
rs73402068	1.00[ASN][1000 genomes]
rs73402076	1.00[ASN][1000 genomes]
rs73402080	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73402082	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942481	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950148	1.00[ASN][1000 genomes]
rs7950961	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7934876	SNORA3	cis	parietal	SCAN
rs7934876	OR51G2	cis	cerebellum	SCAN
rs7934876	OR52I1	cis	parietal	SCAN
rs7934876	ST5	cis	parietal	SCAN
rs7934876	TMEM9B	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8407600-8414200	Enhancers	Fetal Heart	heart
2	chr11:8408200-8415600	Enhancers	Fetal Lung	lung
3	chr11:8411000-8417600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:8411200-8413800	Weak transcription	Right Ventricle	heart
5	chr11:8411200-8417200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8411200-8417600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:8411200-8417600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:8411600-8417600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8411800-8413800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:8412000-8413800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:8412000-8413800	Weak transcription	Left Ventricle	heart
12	chr11:8412200-8413800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:8412200-8413800	Weak transcription	Brain Anterior Caudate	brain
14	chr11:8412400-8413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:8413000-8413800	Enhancers	Stomach Smooth Muscle	stomach
16	chr11:8413600-8414400	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:8413600-8414600	Enhancers	Brain Substantia Nigra	brain

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