Variant report

Variant	rs7935711
Chromosome Location	chr11:45422104-45422105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45418856..45421391-chr11:45421484..45423655,2	K562	blood:

Variant related genes	Relation type
ENSG00000254651	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1037363	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10734532	0.94[ASN][1000 genomes]
rs10742751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838468	0.83[ASN][1000 genomes]
rs11038441	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12282689	0.83[ASN][1000 genomes]
rs12284900	0.83[ASN][1000 genomes]
rs12286627	0.83[ASN][1000 genomes]
rs12288173	0.83[ASN][1000 genomes]
rs1387056	0.83[ASN][1000 genomes]
rs1868912	0.83[ASN][1000 genomes]
rs1873055	0.83[EUR][1000 genomes]
rs2044871	0.84[CHB][hapmap];0.82[AMR][1000 genomes]
rs2044873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2044874	0.83[EUR][1000 genomes]
rs2863706	0.91[CHB][hapmap]
rs4755985	0.83[ASN][1000 genomes]
rs921455	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv1812422	chr11:45419113-45431510	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
2	chr11:45416000-45423400	Weak transcription	Spleen	Spleen
3	chr11:45420200-45423800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:45420600-45423000	Weak transcription	Lung	lung
5	chr11:45421000-45422400	Enhancers	HSMM	muscle
6	chr11:45421000-45422600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:45421000-45423200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:45421000-45423200	Enhancers	Osteobl	bone
9	chr11:45421000-45423400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:45421200-45423200	Enhancers	HUVEC	blood vessel
11	chr11:45421400-45423000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:45421400-45423200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:45421400-45423200	Enhancers	NHDF-Ad	bronchial
14	chr11:45421600-45423200	Bivalent Enhancer	HepG2	liver
15	chr11:45421600-45423200	Enhancers	NHLF	lung
16	chr11:45421800-45422600	Flanking Active TSS	NH-A	brain
17	chr11:45421800-45422800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr11:45421800-45431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:45422000-45422200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:45422000-45422600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:45422000-45422800	Enhancers	HSMMtube	muscle
22	chr11:45422000-45428200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:45422000-45428800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:45422000-45431600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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