Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10734532	0.86[ASN][1000 genomes]
rs10742751	0.94[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10838468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038441	0.81[ASN][1000 genomes]
rs12270792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273702	0.98[AMR][1000 genomes]
rs12283303	0.98[AMR][1000 genomes]
rs12284900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286627	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422148	0.85[EUR][1000 genomes]
rs1387056	1.00[ASN][1000 genomes]
rs1488663	0.96[ASN][1000 genomes]
rs17195431	0.85[EUR][1000 genomes]
rs17788407	0.82[EUR][1000 genomes]
rs1868912	1.00[ASN][1000 genomes]
rs2044873	0.94[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4755985	1.00[ASN][1000 genomes]
rs55713403	0.85[EUR][1000 genomes]
rs56681627	0.85[EUR][1000 genomes]
rs58957446	0.96[AMR][1000 genomes]
rs7931481	0.85[EUR][1000 genomes]
rs7931858	0.85[EUR][1000 genomes]
rs7934345	0.85[EUR][1000 genomes]
rs7935711	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs921455	1.00[ASN][1000 genomes]
rs9787814	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1050657	chr11:45455431-45484320	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1035430	chr11:45455431-45487231	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45436400-45456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45447800-45462400	Weak transcription	Fetal Brain Male	brain

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