Variant report

Variant	rs17788407
Chromosome Location	chr11:45469522-45469523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45467808..45470251-chr11:45470633..45473051,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10769148	0.99[ASN][1000 genomes]
rs10769149	0.99[ASN][1000 genomes]
rs10769153	0.83[ASN][1000 genomes]
rs10838468	0.82[EUR][1000 genomes]
rs11038480	0.95[ASN][1000 genomes]
rs1157786	0.90[ASN][1000 genomes]
rs12282689	0.82[EUR][1000 genomes]
rs12284900	0.82[EUR][1000 genomes]
rs12286627	0.82[EUR][1000 genomes]
rs12288173	0.82[EUR][1000 genomes]
rs12418768	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422148	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1488667	0.92[ASN][1000 genomes]
rs1530869	0.97[ASN][1000 genomes]
rs1565222	0.95[ASN][1000 genomes]
rs17195431	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1825934	0.96[ASN][1000 genomes]
rs2046734	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198151	0.97[ASN][1000 genomes]
rs2198153	0.97[ASN][1000 genomes]
rs2863700	0.92[ASN][1000 genomes]
rs4755988	0.99[ASN][1000 genomes]
rs4755992	0.92[ASN][1000 genomes]
rs4755993	0.91[ASN][1000 genomes]
rs4755995	0.83[ASN][1000 genomes]
rs4755996	0.81[ASN][1000 genomes]
rs55713403	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56681627	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115683	0.86[ASN][1000 genomes]
rs750995	0.96[ASN][1000 genomes]
rs7925329	0.97[ASN][1000 genomes]
rs7931481	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931858	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934345	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs896338	0.92[ASN][1000 genomes]
rs901900	0.93[ASN][1000 genomes]
rs9787760	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787814	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs996122	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1050657	chr11:45455431-45484320	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1035430	chr11:45455431-45487231	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1035254	chr11:45457183-45487231	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45462600-45470600	Weak transcription	Fetal Brain Male	brain
2	chr11:45466600-45474200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45469400-45471000	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links