Variant report

Variant	rs7936052
Chromosome Location	chr11:75269764-75269765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:75269222-75271013	K562	blood:	n/a	n/a
2	MYC	chr11:75269713-75270860	K562	blood:	n/a	chr11:75270176-75270183 chr11:75270177-75270193
3	IRF1	chr11:75269737-75270738	K562	blood:	n/a	n/a
4	NR2F2	chr11:75269622-75270912	K562	blood:	n/a	n/a
5	MAZ	chr11:75268348-75271161	IMR90	lung:	n/a	chr11:75270176-75270183 chr11:75270177-75270193 chr11:75268906-75268916 chr11:75269359-75269368 chr11:75269445-75269455
6	NFIC	chr11:75268808-75269803	SK-N-SH	brain:	n/a	n/a
7	TEAD4	chr11:75269673-75270834	K562	blood:	n/a	chr11:75270318-75270327
8	MXI1	chr11:75268331-75269845	IMR90	lung:	n/a	n/a
9	ZNF143	chr11:75269692-75270426	K562	blood:	n/a	n/a
10	RCOR1	chr11:75269578-75270889	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:75109345..75111138-chr11:75267506..75271056,3	K562	blood:
2	chr11:75267704..75270313-chr11:75526283..75528540,2	K562	blood:
3	chr11:75258907..75261694-chr11:75269136..75271586,3	K562	blood:

Variant related genes	Relation type
SERPINH1	TF binding region
ENSG00000255507	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12279237	1.00[CEU][hapmap]
rs12279369	1.00[CEU][hapmap]
rs12283986	1.00[CEU][hapmap]
rs12284314	1.00[CEU][hapmap]
rs7111265	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75263800-75272600	Enhancers	Fetal Muscle Trunk	muscle
2	chr11:75263800-75272600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:75265600-75270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:75266000-75270400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:75266200-75272800	Enhancers	Fetal Stomach	stomach
6	chr11:75266400-75269800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:75266400-75269800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:75267400-75272800	Enhancers	Fetal Heart	heart
9	chr11:75267800-75272400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:75268000-75269800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr11:75268000-75270000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:75268000-75270000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:75268000-75271200	Enhancers	Ovary	ovary
14	chr11:75268000-75272600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:75268000-75272800	Enhancers	Placenta	Placenta
16	chr11:75268000-75272800	Enhancers	Fetal Thymus	thymus
17	chr11:75268200-75269800	Enhancers	HSMM	muscle
18	chr11:75268200-75270000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:75268200-75270000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:75268200-75270000	Enhancers	Right Atrium	heart
21	chr11:75268200-75270800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:75268200-75271000	Enhancers	Lung	lung
23	chr11:75268200-75271200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr11:75268200-75271200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:75268200-75271200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:75268400-75269800	Weak transcription	Gastric	stomach
27	chr11:75268400-75270000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:75268400-75270000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:75268400-75270200	Enhancers	HMEC	breast
30	chr11:75268400-75270800	Enhancers	Fetal Brain Male	brain
31	chr11:75268400-75270800	Enhancers	Right Ventricle	heart
32	chr11:75268400-75270800	Enhancers	NHEK	skin
33	chr11:75268400-75272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:75268600-75269800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:75268600-75270000	Enhancers	Aorta	Aorta
36	chr11:75268600-75270600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:75268600-75270800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:75268600-75270800	Enhancers	Duodenum Mucosa	Duodenum
39	chr11:75268600-75270800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr11:75268600-75271000	Enhancers	Left Ventricle	heart
41	chr11:75268600-75271000	Enhancers	A549	lung
42	chr11:75268600-75271000	Enhancers	HUVEC	blood vessel
43	chr11:75268600-75271200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:75268600-75271200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:75268600-75271800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:75268600-75272400	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr11:75268600-75272800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:75268800-75269800	Enhancers	Brain Germinal Matrix	brain
49	chr11:75268800-75270600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:75268800-75270800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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