Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:75434809..75438272-chr11:75499548..75502403,3	MCF-7	breast:
2	chr11:75437719..75439941-chr11:75444285..75446896,2	K562	blood:
3	chr11:75428925..75430728-chr11:75436726..75439410,2	K562	blood:

Variant related genes	Relation type
ENSG00000166391	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12276456	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12279369	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283986	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284314	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1458834	1.00[CEU][hapmap]
rs17134361	1.00[CEU][hapmap]
rs2371373	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7102544	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7118055	1.00[CEU][hapmap]
rs7121639	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7122276	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7122386	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7125495	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs73502498	1.00[EUR][1000 genomes]
rs7933028	1.00[CEU][hapmap]
rs7934862	1.00[CEU][hapmap]
rs7936052	1.00[CEU][hapmap]
rs7937098	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7939174	1.00[CEU][hapmap]
rs7949863	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75429600-75439600	Weak transcription	Fetal Stomach	stomach
2	chr11:75431000-75439800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:75433200-75443200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:75433800-75439600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:75434400-75441200	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr11:75435200-75443200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr11:75435600-75442400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:75435600-75443000	Strong transcription	Fetal Intestine Large	intestine
9	chr11:75436200-75438200	Weak transcription	HepG2	liver
10	chr11:75436600-75440400	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:75436800-75439400	Strong transcription	Colonic Mucosa	Colon
12	chr11:75436800-75443000	Strong transcription	Fetal Intestine Small	intestine
13	chr11:75437400-75438400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:75437400-75439600	Weak transcription	Left Ventricle	heart
15	chr11:75437400-75444000	Weak transcription	Right Ventricle	heart
16	chr11:75437400-75444400	Weak transcription	Right Atrium	heart
17	chr11:75437600-75439600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:75437600-75444400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:75438000-75442800	Strong transcription	Liver	Liver

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