Variant report

Variant	rs17134361
Chromosome Location	chr11:75529505-75529506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr11:75529333-75529510	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75525852..75527769-chr11:75527858..75529905,2	K562	blood:
2	chr11:75528435..75529955-chr16:85494323..85496150,2	MCF-7	breast:
3	chr11:75525388..75527600-chr11:75527925..75530151,2	K562	blood:
4	chr11:75527688..75530896-chr11:75531829..75535250,5	K562	blood:
5	chr11:75528469..75531370-chr11:75554920..75558717,3	MCF-7	breast:
6	chr11:75522755..75529746-chr11:75549090..75554652,13	MCF-7	breast:
7	chr11:75521603..75525061-chr11:75527871..75530189,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255507	TF binding region
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12279237	1.00[CEU][hapmap]
rs12279369	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12283986	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12284314	1.00[CEU][hapmap]
rs1458834	1.00[CEU][hapmap]
rs17134375	1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34113941	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs55740367	1.00[EUR][1000 genomes]
rs56216135	1.00[EUR][1000 genomes]
rs56230849	1.00[EUR][1000 genomes]
rs56280826	1.00[EUR][1000 genomes]
rs57081953	1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	1.00[EUR][1000 genomes]
rs7102544	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7105260	1.00[EUR][1000 genomes]
rs7106322	1.00[EUR][1000 genomes]
rs7115978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118055	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7121639	1.00[CEU][hapmap]
rs7122276	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7122386	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7122695	1.00[EUR][1000 genomes]
rs7125495	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	1.00[EUR][1000 genomes]
rs73491733	1.00[EUR][1000 genomes]
rs73491734	1.00[EUR][1000 genomes]
rs73491737	1.00[EUR][1000 genomes]
rs73491741	1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933028	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934683	1.00[EUR][1000 genomes]
rs7934862	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7934895	1.00[EUR][1000 genomes]
rs7937098	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939174	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948380	1.00[EUR][1000 genomes]
rs7948526	1.00[EUR][1000 genomes]
rs7948641	1.00[EUR][1000 genomes]
rs7949863	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75525600-75529800	Active TSS	GM12878-XiMat	blood
2	chr11:75528000-75531400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75528000-75537800	Weak transcription	Aorta	Aorta
4	chr11:75528000-75538400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:75528200-75529600	Weak transcription	Spleen	Spleen
6	chr11:75528200-75530400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:75528200-75531800	Weak transcription	Gastric	stomach
8	chr11:75528200-75531800	Weak transcription	Ovary	ovary
9	chr11:75528200-75541000	Weak transcription	Esophagus	oesophagus
10	chr11:75528200-75549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:75528200-75553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:75528400-75530600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:75528400-75530600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:75528400-75530600	Enhancers	HepG2	liver
15	chr11:75528400-75530800	Enhancers	Placenta	Placenta
16	chr11:75528400-75531200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:75528400-75531400	Weak transcription	Stomach Mucosa	stomach
18	chr11:75528400-75531600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:75528400-75531800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:75528400-75531800	Weak transcription	Left Ventricle	heart
21	chr11:75528400-75533400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:75528400-75533400	Weak transcription	Fetal Stomach	stomach
23	chr11:75528400-75533800	Weak transcription	Lung	lung
24	chr11:75528400-75537400	Weak transcription	HSMMtube	muscle
25	chr11:75528400-75541600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:75528400-75543000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:75528400-75550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:75528400-75561600	Weak transcription	HSMM	muscle
29	chr11:75528400-75561800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:75528600-75529800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:75528600-75530000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:75528600-75530600	Enhancers	Hela-S3	cervix
33	chr11:75528600-75530600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:75528600-75531600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:75528600-75531600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:75528600-75531800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:75528600-75531800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:75528600-75531800	Weak transcription	Right Atrium	heart
39	chr11:75528600-75531800	Weak transcription	NHEK	skin
40	chr11:75528600-75532000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:75528600-75532400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:75528600-75532600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:75528600-75533000	Weak transcription	K562	blood
44	chr11:75528600-75533400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr11:75528600-75533800	Weak transcription	Colonic Mucosa	Colon
46	chr11:75528600-75534000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:75528600-75534000	Weak transcription	Fetal Intestine Small	intestine
48	chr11:75528600-75534000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:75528600-75534200	Weak transcription	Primary T cells from cord blood	blood
50	chr11:75528600-75534200	Weak transcription	Fetal Intestine Large	intestine

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