Variant report

Variant	rs7105260
Chromosome Location	chr11:75561246-75561247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75538908..75540787-chr11:75559807..75562347,2	MCF-7	breast:
2	chr11:75552534..75554208-chr11:75559860..75561535,2	K562	blood:
3	chr11:75521249..75523671-chr11:75559496..75562392,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11236561	0.88[AFR][1000 genomes]
rs12279369	1.00[EUR][1000 genomes]
rs12283986	1.00[EUR][1000 genomes]
rs17134361	1.00[EUR][1000 genomes]
rs17134375	1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34113941	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs55740367	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56216135	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56230849	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56280826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57081953	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	1.00[EUR][1000 genomes]
rs7102544	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106322	1.00[EUR][1000 genomes]
rs7115978	1.00[EUR][1000 genomes]
rs7118055	1.00[EUR][1000 genomes]
rs7121639	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7122125	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7122276	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122386	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122695	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125495	1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491737	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491741	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	1.00[EUR][1000 genomes]
rs7933028	1.00[EUR][1000 genomes]
rs7934683	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934862	1.00[EUR][1000 genomes]
rs7934895	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937098	1.00[EUR][1000 genomes]
rs7939174	1.00[EUR][1000 genomes]
rs7948380	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948526	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948641	1.00[EUR][1000 genomes]
rs7949863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75528400-75561600	Weak transcription	HSMM	muscle
2	chr11:75528400-75561800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:75528600-75561400	Weak transcription	Fetal Brain Female	brain
4	chr11:75528600-75561400	Weak transcription	Thymus	Thymus
5	chr11:75528600-75563600	Weak transcription	Dnd41	blood
6	chr11:75535400-75579000	Weak transcription	Fetal Intestine Large	intestine
7	chr11:75535800-75573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:75538000-75563000	Weak transcription	HepG2	liver
9	chr11:75538600-75567600	Weak transcription	Placenta	Placenta
10	chr11:75538800-75591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:75542800-75561800	Weak transcription	Fetal Thymus	thymus
12	chr11:75543800-75561400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:75544000-75584000	Weak transcription	Small Intestine	intestine
14	chr11:75547400-75566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:75547800-75563400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:75548000-75562600	Weak transcription	Primary T cells from cord blood	blood
18	chr11:75549800-75561800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:75550200-75564000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:75550200-75564000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:75550200-75564000	Weak transcription	Fetal Stomach	stomach
23	chr11:75551000-75562000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:75551600-75563400	Weak transcription	NHEK	skin
25	chr11:75551800-75564600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:75551800-75569000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:75552000-75561800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:75552000-75580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:75552400-75561400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:75553200-75561800	Weak transcription	Fetal Lung	lung
31	chr11:75553200-75561800	Weak transcription	Stomach Mucosa	stomach
32	chr11:75553200-75564400	Weak transcription	Gastric	stomach
33	chr11:75553400-75561400	Weak transcription	Psoas Muscle	Psoas
34	chr11:75553400-75561400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:75553800-75600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:75554800-75561400	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:75554800-75562400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:75557400-75562400	Weak transcription	Esophagus	oesophagus
39	chr11:75557400-75586800	Weak transcription	Ovary	ovary
40	chr11:75558000-75561400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:75558400-75602800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:75559800-75566200	Weak transcription	Hela-S3	cervix
43	chr11:75559800-75575600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr11:75560200-75579400	Weak transcription	Pancreas	Pancrea
45	chr11:75560800-75561600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr11:75560800-75561800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr11:75560800-75562000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:75560800-75562400	Enhancers	Primary B cells from peripheral blood	blood
49	chr11:75560800-75562800	Enhancers	Adipose Nuclei	Adipose
50	chr11:75560800-75563000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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