Variant report

Variant	rs7106322
Chromosome Location	chr11:75501874-75501875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr11:75501850-75502588	MCF-7	breast:	n/a	chr11:75502255-75502274 chr11:75501882-75501896

No.	Distal block	Cell Line	Cell type
1	chr11:75434809..75438272-chr11:75499548..75502403,3	MCF-7	breast:
2	chr11:75477223..75481853-chr11:75500623..75503657,5	MCF-7	breast:
3	chr11:75498372..75500461-chr11:75500587..75502253,2	MCF-7	breast:
4	chr11:75501690..75503528-chr11:75525644..75528441,2	K562	blood:
5	chr11:75487408..75492823-chr11:75500616..75503044,5	MCF-7	breast:

Variant related genes	Relation type
DGAT2	TF binding region
ENSG00000062282	Chromatin interaction
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction
ENSG00000247867	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12279369	1.00[EUR][1000 genomes]
rs12283986	1.00[EUR][1000 genomes]
rs17134361	1.00[EUR][1000 genomes]
rs17134375	1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	1.00[EUR][1000 genomes]
rs34113941	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs55740367	1.00[EUR][1000 genomes]
rs56216135	1.00[EUR][1000 genomes]
rs56230849	1.00[EUR][1000 genomes]
rs56280826	1.00[EUR][1000 genomes]
rs57081953	1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	1.00[EUR][1000 genomes]
rs7102544	1.00[EUR][1000 genomes]
rs7105260	1.00[EUR][1000 genomes]
rs7113952	1.00[AMR][1000 genomes]
rs7115978	1.00[EUR][1000 genomes]
rs7118055	1.00[EUR][1000 genomes]
rs7122276	1.00[EUR][1000 genomes]
rs7122386	1.00[EUR][1000 genomes]
rs7122695	1.00[EUR][1000 genomes]
rs7125495	1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	1.00[EUR][1000 genomes]
rs73491733	1.00[EUR][1000 genomes]
rs73491734	1.00[EUR][1000 genomes]
rs73491737	1.00[EUR][1000 genomes]
rs73491741	1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	1.00[EUR][1000 genomes]
rs7933028	1.00[EUR][1000 genomes]
rs7934683	1.00[EUR][1000 genomes]
rs7934862	1.00[EUR][1000 genomes]
rs7934895	1.00[EUR][1000 genomes]
rs7937098	1.00[EUR][1000 genomes]
rs7939174	1.00[EUR][1000 genomes]
rs7948380	1.00[EUR][1000 genomes]
rs7948526	1.00[EUR][1000 genomes]
rs7948641	1.00[EUR][1000 genomes]
rs7949863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75481000-75506600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:75484800-75503800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:75489200-75508200	Weak transcription	GM12878-XiMat	blood
4	chr11:75490800-75504600	Weak transcription	Fetal Stomach	stomach
5	chr11:75492000-75503600	Weak transcription	Right Ventricle	heart
6	chr11:75493000-75504400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:75495000-75511200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:75495400-75506400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:75495400-75512000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:75495800-75505400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:75496000-75504200	Genic enhancers	Liver	Liver
12	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:75497400-75503400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:75497600-75509400	Weak transcription	Primary B cells from cord blood	blood
16	chr11:75497800-75503600	Weak transcription	Pancreas	Pancrea
17	chr11:75497800-75508200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:75497800-75514200	Weak transcription	Gastric	stomach
19	chr11:75498000-75507600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:75498800-75505200	Strong transcription	Fetal Intestine Large	intestine
21	chr11:75498800-75506600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:75498800-75511600	Weak transcription	Stomach Mucosa	stomach
23	chr11:75499000-75512000	Weak transcription	Lung	lung
24	chr11:75499200-75506400	Strong transcription	Fetal Intestine Small	intestine
25	chr11:75499200-75507600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:75499400-75502200	Strong transcription	HepG2	liver
27	chr11:75500600-75505000	Genic enhancers	Adipose Nuclei	Adipose
28	chr11:75500800-75502400	Enhancers	Esophagus	oesophagus
29	chr11:75501200-75503000	Enhancers	A549	lung
30	chr11:75501400-75507000	Weak transcription	Spleen	Spleen
31	chr11:75501600-75502600	Enhancers	NHEK	skin
32	chr11:75501800-75502600	Enhancers	HMEC	breast
33	chr11:75501800-75502800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:75501800-75503000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:75501800-75513200	Weak transcription	Stomach Smooth Muscle	stomach

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