Variant report

Variant	rs34113941
Chromosome Location	chr11:75511469-75511470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75511055..75516378-chr11:75524946..75527964,8	MCF-7	breast:
2	chr11:75510774..75513236-chr11:75514739..75516644,2	MCF-7	breast:
3	chr11:75434325..75436917-chr11:75510297..75512123,2	MCF-7	breast:
4	chr11:75510740..75513614-chr11:75516273..75518633,2	MCF-7	breast:
5	chr11:75501785..75503630-chr11:75510335..75512065,2	MCF-7	breast:
6	chr11:75505740..75508702-chr11:75509155..75512938,4	K562	blood:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction
ENSG00000062282	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12279369	1.00[EUR][1000 genomes]
rs12283986	1.00[EUR][1000 genomes]
rs17134361	1.00[EUR][1000 genomes]
rs17134375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs55740367	1.00[EUR][1000 genomes]
rs56216135	1.00[EUR][1000 genomes]
rs56230849	1.00[EUR][1000 genomes]
rs56280826	1.00[EUR][1000 genomes]
rs57081953	1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102544	1.00[EUR][1000 genomes]
rs7105260	1.00[EUR][1000 genomes]
rs7106322	1.00[EUR][1000 genomes]
rs7115978	1.00[EUR][1000 genomes]
rs7118055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122276	1.00[EUR][1000 genomes]
rs7122386	1.00[EUR][1000 genomes]
rs7122695	1.00[EUR][1000 genomes]
rs7125495	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	1.00[EUR][1000 genomes]
rs73491733	1.00[EUR][1000 genomes]
rs73491734	1.00[EUR][1000 genomes]
rs73491737	1.00[EUR][1000 genomes]
rs73491741	1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	1.00[EUR][1000 genomes]
rs7933028	1.00[EUR][1000 genomes]
rs7934683	1.00[EUR][1000 genomes]
rs7934862	1.00[EUR][1000 genomes]
rs7934895	1.00[EUR][1000 genomes]
rs7937098	1.00[EUR][1000 genomes]
rs7939174	1.00[EUR][1000 genomes]
rs7948380	1.00[EUR][1000 genomes]
rs7948526	1.00[EUR][1000 genomes]
rs7948641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75495400-75512000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:75497800-75514200	Weak transcription	Gastric	stomach
5	chr11:75498800-75511600	Weak transcription	Stomach Mucosa	stomach
6	chr11:75499000-75512000	Weak transcription	Lung	lung
7	chr11:75501800-75513200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:75504400-75512000	Weak transcription	Right Atrium	heart
9	chr11:75505000-75512200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:75506400-75514600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:75507400-75512000	Weak transcription	Right Ventricle	heart
12	chr11:75507400-75512000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:75507400-75512200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:75507600-75512000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:75507600-75512200	Strong transcription	Adipose Nuclei	Adipose
16	chr11:75507800-75511600	Weak transcription	Brain Angular Gyrus	brain
17	chr11:75508000-75514400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:75508200-75514400	Strong transcription	Fetal Intestine Small	intestine
19	chr11:75508400-75513000	Strong transcription	Liver	Liver
20	chr11:75508600-75513000	Strong transcription	Fetal Intestine Large	intestine
21	chr11:75508800-75512000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:75509000-75511800	Weak transcription	Placenta	Placenta
23	chr11:75509000-75511800	Weak transcription	HMEC	breast
24	chr11:75509000-75525200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:75509200-75512000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:75509200-75513800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:75509200-75515600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:75509400-75511600	Weak transcription	GM12878-XiMat	blood
29	chr11:75509400-75511800	Weak transcription	Brain Anterior Caudate	brain
30	chr11:75509400-75511800	Weak transcription	NHEK	skin
31	chr11:75509400-75512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:75509600-75511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:75509600-75512000	Weak transcription	Spleen	Spleen
34	chr11:75509600-75513200	Strong transcription	HepG2	liver
35	chr11:75509800-75511800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:75509800-75512000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:75509800-75525000	Weak transcription	Fetal Stomach	stomach
38	chr11:75510200-75512000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:75510600-75512600	Weak transcription	Primary B cells from cord blood	blood
40	chr11:75510800-75514400	Enhancers	Fetal Thymus	thymus
41	chr11:75511000-75514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr11:75511200-75512600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:75511200-75512800	Enhancers	Esophagus	oesophagus
44	chr11:75511200-75513000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:75511200-75514000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:75511400-75512000	Genic enhancers	Primary monocytes fromperipheralblood	blood
47	chr11:75511400-75512000	Enhancers	Brain Cingulate Gyrus	brain

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