Variant report

Variant	rs7939174
Chromosome Location	chr11:75516573-75516574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75510740..75513614-chr11:75516273..75518633,2	MCF-7	breast:
2	chr11:75510774..75513236-chr11:75514739..75516644,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12279237	1.00[CEU][hapmap]
rs12279369	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12283986	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12284314	1.00[CEU][hapmap]
rs1458834	1.00[CEU][hapmap]
rs17134361	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134375	1.00[EUR][1000 genomes]
rs2371370	1.00[EUR][1000 genomes]
rs2371373	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34113941	1.00[EUR][1000 genomes]
rs3862806	1.00[EUR][1000 genomes]
rs55740367	1.00[EUR][1000 genomes]
rs56216135	1.00[EUR][1000 genomes]
rs56230849	1.00[EUR][1000 genomes]
rs56280826	1.00[EUR][1000 genomes]
rs57081953	1.00[EUR][1000 genomes]
rs58443332	1.00[EUR][1000 genomes]
rs58509556	1.00[EUR][1000 genomes]
rs60606258	1.00[EUR][1000 genomes]
rs7102067	1.00[EUR][1000 genomes]
rs7102544	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7105260	1.00[EUR][1000 genomes]
rs7106322	1.00[EUR][1000 genomes]
rs7115978	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118055	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7121639	1.00[CEU][hapmap]
rs7122276	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7122386	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7122695	1.00[EUR][1000 genomes]
rs7125495	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7131141	1.00[EUR][1000 genomes]
rs73491729	1.00[EUR][1000 genomes]
rs73491733	1.00[EUR][1000 genomes]
rs73491734	1.00[EUR][1000 genomes]
rs73491737	1.00[EUR][1000 genomes]
rs73491741	1.00[EUR][1000 genomes]
rs73504544	1.00[EUR][1000 genomes]
rs7928366	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933028	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934683	1.00[EUR][1000 genomes]
rs7934862	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7934895	1.00[EUR][1000 genomes]
rs7937098	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948380	1.00[EUR][1000 genomes]
rs7948526	1.00[EUR][1000 genomes]
rs7948641	1.00[EUR][1000 genomes]
rs7949863	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75509000-75525200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75509800-75525000	Weak transcription	Fetal Stomach	stomach
3	chr11:75512000-75518600	Weak transcription	Stomach Mucosa	stomach
4	chr11:75512200-75521800	Weak transcription	Lung	lung
5	chr11:75512800-75523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:75512800-75525000	Weak transcription	Esophagus	oesophagus
7	chr11:75513000-75517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:75513000-75521400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:75513000-75525200	Weak transcription	Fetal Intestine Large	intestine
10	chr11:75513200-75519600	Weak transcription	GM12878-XiMat	blood
11	chr11:75513400-75524600	Weak transcription	Primary T cells from cord blood	blood
12	chr11:75513400-75525000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:75513800-75525000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:75514400-75519800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:75514400-75520200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:75514400-75524600	Weak transcription	Fetal Intestine Small	intestine
17	chr11:75514800-75517000	Weak transcription	Brain Angular Gyrus	brain
18	chr11:75514800-75518600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:75514800-75520600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:75515000-75517000	Weak transcription	Brain Substantia Nigra	brain
21	chr11:75515600-75520200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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