Variant report
| Variant | rs7938517 |
|---|---|
| Chromosome Location | chr11:26654394-26654395 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10835008 | 1.00[MEX][hapmap] |
| rs10835031 | 0.95[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs11029653 | 0.94[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs11029655 | 0.95[YRI][hapmap] |
| rs11029660 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12269966 | 0.95[YRI][hapmap] |
| rs12270321 | 0.95[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs12275062 | 0.92[AFR][1000 genomes] |
| rs12279306 | 1.00[EUR][1000 genomes] |
| rs12282129 | 0.81[AFR][1000 genomes] |
| rs12286201 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12294962 | 1.00[MEX][hapmap] |
| rs12295913 | 1.00[MEX][hapmap] |
| rs12418283 | 1.00[MEX][hapmap] |
| rs1353142 | 0.90[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs1389454 | 0.92[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs2029714 | 0.92[AFR][1000 genomes] |
| rs66555628 | 1.00[EUR][1000 genomes] |
| rs66687654 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs67567426 | 0.94[EUR][1000 genomes] |
| rs68097741 | 1.00[EUR][1000 genomes] |
| rs7125967 | 0.94[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7127915 | 1.00[MEX][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs72881707 | 0.83[EUR][1000 genomes] |
| rs72881784 | 1.00[EUR][1000 genomes] |
| rs7935276 | 0.94[EUR][1000 genomes] |
| rs7942183 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044544 | chr11:26506962-26967285 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050121 | chr11:26532655-26675303 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv540974 | chr11:26532655-26675303 | Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv916187 | chr11:26576875-27328603 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26645200-26671600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
