Variant report

Variant	rs12282129
Chromosome Location	chr11:26647537-26647538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10835008	1.00[ASN][1000 genomes]
rs10835031	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029622	1.00[ASN][1000 genomes]
rs11029624	1.00[ASN][1000 genomes]
rs11029634	1.00[ASN][1000 genomes]
rs11029635	1.00[ASN][1000 genomes]
rs11029652	0.93[AFR][1000 genomes]
rs11029653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029660	0.81[AFR][1000 genomes]
rs12269966	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270321	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12275062	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12288077	1.00[ASN][1000 genomes]
rs12293283	1.00[ASN][1000 genomes]
rs12293598	0.94[ASN][1000 genomes]
rs12294962	1.00[ASN][1000 genomes]
rs12295913	1.00[ASN][1000 genomes]
rs12417786	0.93[ASN][1000 genomes]
rs12418283	1.00[ASN][1000 genomes]
rs12418403	1.00[ASN][1000 genomes]
rs12421216	1.00[ASN][1000 genomes]
rs12421673	0.93[ASN][1000 genomes]
rs1353142	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1389454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243601	0.93[ASN][1000 genomes]
rs17243608	0.93[ASN][1000 genomes]
rs17243615	0.93[ASN][1000 genomes]
rs2029714	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61877276	0.93[ASN][1000 genomes]
rs61877282	0.93[ASN][1000 genomes]
rs66495309	1.00[ASN][1000 genomes]
rs66527152	1.00[ASN][1000 genomes]
rs66591292	0.93[ASN][1000 genomes]
rs68030591	1.00[ASN][1000 genomes]
rs7125967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127023	0.93[AFR][1000 genomes]
rs7127915	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881705	0.93[ASN][1000 genomes]
rs72881737	0.93[ASN][1000 genomes]
rs72881740	0.93[ASN][1000 genomes]
rs72881742	0.93[ASN][1000 genomes]
rs72881752	0.93[ASN][1000 genomes]
rs72881763	0.93[ASN][1000 genomes]
rs72881790	0.93[ASN][1000 genomes]
rs72881791	0.93[ASN][1000 genomes]
rs72881793	0.93[ASN][1000 genomes]
rs72883216	0.93[ASN][1000 genomes]
rs72883218	0.93[ASN][1000 genomes]
rs72883221	0.93[ASN][1000 genomes]
rs72883224	0.93[ASN][1000 genomes]
rs72883225	0.93[ASN][1000 genomes]
rs72883226	0.93[ASN][1000 genomes]
rs72883230	0.93[ASN][1000 genomes]
rs72883231	0.93[ASN][1000 genomes]
rs72883237	0.93[ASN][1000 genomes]
rs72883242	0.93[ASN][1000 genomes]
rs72883245	0.93[ASN][1000 genomes]
rs72883247	0.93[ASN][1000 genomes]
rs73434383	1.00[ASN][1000 genomes]
rs7935600	1.00[ASN][1000 genomes]
rs7935694	1.00[ASN][1000 genomes]
rs7938517	0.81[AFR][1000 genomes]
rs7942183	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7945396	1.00[ASN][1000 genomes]
rs972	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26644800-26647800	Weak transcription	NHDF-Ad	bronchial
2	chr11:26645000-26648000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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