Variant report

Variant	rs17243608
Chromosome Location	chr11:26687922-26687923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26682812..26684520-chr11:26686071..26688334,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10835008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10835031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11029622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11029624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11029634	0.93[ASN][1000 genomes]
rs11029635	0.93[ASN][1000 genomes]
rs11029653	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11029655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12269966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12270321	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12282129	0.93[ASN][1000 genomes]
rs12288077	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs12293283	0.93[ASN][1000 genomes]
rs12293598	0.87[ASN][1000 genomes]
rs12294962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12295913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12417786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12418283	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12418403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12421216	0.93[ASN][1000 genomes]
rs12421673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1353142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1389454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17243601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877276	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66495309	0.93[ASN][1000 genomes]
rs66527152	0.93[ASN][1000 genomes]
rs66591292	1.00[ASN][1000 genomes]
rs68030591	0.93[ASN][1000 genomes]
rs7125967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7127915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs72881705	1.00[ASN][1000 genomes]
rs72881737	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881740	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881742	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881752	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881763	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881790	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881791	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72881793	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883216	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883218	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883221	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883224	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883225	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883226	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883230	1.00[ASN][1000 genomes]
rs72883231	1.00[ASN][1000 genomes]
rs72883237	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883242	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883245	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72883247	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73434383	0.93[ASN][1000 genomes]
rs7935600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7935694	0.93[ASN][1000 genomes]
rs7945396	0.93[ASN][1000 genomes]
rs972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26687400-26688000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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