Variant report

Variant	rs61877276
Chromosome Location	chr11:26671014-26671015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:26318438..26319350-chr11:26670793..26671982,7	MCF-7	breast:
2	chr11:26669136..26671365-chr14:104584975..104586845,2	MCF-7	breast:
3	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10835008	0.93[ASN][1000 genomes]
rs10835031	0.93[ASN][1000 genomes]
rs11029622	0.93[ASN][1000 genomes]
rs11029624	0.93[ASN][1000 genomes]
rs11029634	0.93[ASN][1000 genomes]
rs11029635	0.93[ASN][1000 genomes]
rs11029653	0.82[ASN][1000 genomes]
rs11029655	0.93[ASN][1000 genomes]
rs12269966	0.93[ASN][1000 genomes]
rs12270321	0.93[ASN][1000 genomes]
rs12282129	0.93[ASN][1000 genomes]
rs12288077	0.93[ASN][1000 genomes]
rs12293283	0.93[ASN][1000 genomes]
rs12293598	0.87[ASN][1000 genomes]
rs12294962	0.93[ASN][1000 genomes]
rs12295913	0.93[ASN][1000 genomes]
rs12417786	1.00[ASN][1000 genomes]
rs12418283	0.93[ASN][1000 genomes]
rs12418403	0.93[ASN][1000 genomes]
rs12421216	0.93[ASN][1000 genomes]
rs12421673	1.00[ASN][1000 genomes]
rs1353142	0.93[ASN][1000 genomes]
rs1389454	0.93[ASN][1000 genomes]
rs17243601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243608	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17243615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877282	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66495309	0.93[ASN][1000 genomes]
rs66527152	0.93[ASN][1000 genomes]
rs66591292	1.00[ASN][1000 genomes]
rs68030591	0.93[ASN][1000 genomes]
rs7125967	0.93[ASN][1000 genomes]
rs7127915	0.93[ASN][1000 genomes]
rs72881705	1.00[ASN][1000 genomes]
rs72881737	1.00[ASN][1000 genomes]
rs72881740	1.00[ASN][1000 genomes]
rs72881742	1.00[ASN][1000 genomes]
rs72881752	1.00[ASN][1000 genomes]
rs72881763	1.00[ASN][1000 genomes]
rs72881790	1.00[ASN][1000 genomes]
rs72881791	1.00[ASN][1000 genomes]
rs72881793	1.00[ASN][1000 genomes]
rs72883216	1.00[ASN][1000 genomes]
rs72883218	1.00[ASN][1000 genomes]
rs72883221	1.00[ASN][1000 genomes]
rs72883224	1.00[ASN][1000 genomes]
rs72883225	1.00[ASN][1000 genomes]
rs72883226	1.00[ASN][1000 genomes]
rs72883230	1.00[ASN][1000 genomes]
rs72883231	1.00[ASN][1000 genomes]
rs72883237	1.00[ASN][1000 genomes]
rs72883242	1.00[ASN][1000 genomes]
rs72883245	1.00[ASN][1000 genomes]
rs72883247	1.00[ASN][1000 genomes]
rs73434383	0.93[ASN][1000 genomes]
rs7935600	0.93[ASN][1000 genomes]
rs7935694	0.93[ASN][1000 genomes]
rs7945396	0.93[ASN][1000 genomes]
rs972	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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