Variant report

Variant	rs7939044
Chromosome Location	chr11:10575635-10575636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10458931	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs10500725	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs10840433	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs11042865	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs11042866	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11042868	0.83[CHB][hapmap]
rs11042892	0.91[CEU][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12448	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs1350991	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4146830	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs4243915	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs4910152	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7105657	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7131588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932321	0.81[JPT][hapmap]
rs7943804	0.81[JPT][hapmap]
rs9300104	0.86[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7939044	MRVI1	cis	normal skin	skin_eQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10573400-10578200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10573600-10578400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10574000-10578000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:10575000-10580200	Weak transcription	Aorta	Aorta
6	chr11:10575600-10576200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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