Variant report

Variant	rs7943804
Chromosome Location	chr11:10526060-10526061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10514613..10516462-chr11:10525360..10527624,2	K562	blood:
2	chr11:10522129..10523861-chr11:10525994..10530069,4	K562	blood:
3	chr11:10526046..10528232-chr11:10533609..10536011,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10458931	0.81[CHD][hapmap]
rs10500725	0.81[JPT][hapmap]
rs10840433	0.81[CHD][hapmap]
rs11042865	0.81[JPT][hapmap]
rs11042866	0.81[JPT][hapmap]
rs12448	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs1350991	0.81[CHD][hapmap]
rs4146830	0.81[JPT][hapmap]
rs4243915	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs7111477	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs72859123	0.96[ASN][1000 genomes]
rs72859126	0.96[ASN][1000 genomes]
rs7932321	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939044	0.81[JPT][hapmap]
rs9300104	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv972946	chr11:10523147-10534985	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
3	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
6	chr11:10502600-10529000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
8	chr11:10507800-10544800	Weak transcription	Fetal Kidney	kidney
9	chr11:10510400-10528200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:10510600-10527800	Strong transcription	Thymus	Thymus
11	chr11:10510800-10528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr11:10511000-10529600	Strong transcription	Fetal Thymus	thymus
13	chr11:10511000-10533200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr11:10512400-10526200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10512400-10526800	Strong transcription	NHEK	skin
16	chr11:10512800-10526800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:10512800-10531600	Weak transcription	Stomach Mucosa	stomach
18	chr11:10512800-10540400	Weak transcription	Fetal Lung	lung
19	chr11:10512800-10548600	Weak transcription	Right Ventricle	heart
20	chr11:10513000-10526800	Weak transcription	HMEC	breast
21	chr11:10513000-10531800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:10513200-10527600	Weak transcription	Right Atrium	heart
23	chr11:10513200-10538000	Weak transcription	Left Ventricle	heart
24	chr11:10513400-10536000	Weak transcription	A549	lung
25	chr11:10513800-10528200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:10514000-10527200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:10514200-10529600	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:10514600-10531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:10514600-10535600	Weak transcription	HSMM	muscle
30	chr11:10514800-10528200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:10515000-10527000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10515000-10528200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:10515800-10540600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:10516000-10544000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr11:10517200-10531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:10520000-10543400	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:10520400-10531600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:10521400-10529000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10522200-10529600	Weak transcription	Fetal Heart	heart
40	chr11:10522200-10531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:10522200-10531800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:10522200-10541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:10522400-10526600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:10522400-10532400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:10522400-10535600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:10522400-10537800	Weak transcription	Fetal Intestine Large	intestine
47	chr11:10522400-10540600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:10522400-10546200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:10522400-10560800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:10522800-10540600	Weak transcription	Stomach Smooth Muscle	stomach

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