Variant report

Variant	rs7939974
Chromosome Location	chr11:75762840-75762841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75761226..75763293-chr11:75765586..75768192,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41358348	0.91[LWK][hapmap]
rs59525081	0.94[AFR][1000 genomes]
rs60273992	0.94[AFR][1000 genomes]
rs7111896	1.00[LWK][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs73493976	0.94[AFR][1000 genomes]
rs73496145	0.94[AFR][1000 genomes]
rs73498258	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75716800-75778200	Weak transcription	Ovary	ovary
2	chr11:75731600-75771800	Weak transcription	Lung	lung
3	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
5	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:75740200-75776600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:75740400-75772600	Weak transcription	Liver	Liver
9	chr11:75742400-75784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:75742400-75785400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:75743000-75784800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:75744000-75763000	Weak transcription	Gastric	stomach
13	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
14	chr11:75748800-75780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:75755400-75779200	Weak transcription	Right Ventricle	heart
17	chr11:75755800-75776800	Weak transcription	Left Ventricle	heart
18	chr11:75756000-75772600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:75758600-75763000	Weak transcription	Pancreas	Pancrea
20	chr11:75759400-75778200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:75760000-75776000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:75760000-75777800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:75760200-75776800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:75760400-75765200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:75760400-75767200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:75760400-75772800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:75760400-75778000	Weak transcription	Fetal Thymus	thymus
28	chr11:75760400-75784800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:75760600-75776800	Weak transcription	Placenta	Placenta
30	chr11:75760600-75788400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:75760800-75768600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:75760800-75777000	Weak transcription	Fetal Lung	lung
33	chr11:75760800-75785200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:75761000-75763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:75761000-75766200	Strong transcription	Primary B cells from cord blood	blood
36	chr11:75761000-75770200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:75761000-75771600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:75761000-75772200	Weak transcription	Fetal Intestine Small	intestine
39	chr11:75761000-75773000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:75761000-75773000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:75761000-75773400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:75761000-75776400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:75761000-75778200	Weak transcription	Thymus	Thymus
44	chr11:75761000-75784200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:75761200-75763000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:75761200-75763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:75761200-75763200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:75761200-75765200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:75761200-75767800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:75761200-75768000	Weak transcription	H9 Cell Line	embryonic stem cell

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