Variant report

Variant	rs7940192
Chromosome Location	chr11:86282467-86282468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86166748..86168316-chr11:86282275..86283346,25	MCF-7	breast:
2	chr11:86166825..86167806-chr11:86282278..86283302,7	K562	blood:
3	chr11:86174300..86177021-chr11:86280840..86283667,2	MCF-7	breast:
4	chr11:86168251..86170470-chr11:86280269..86282834,2	MCF-7	breast:
5	chr11:86198272..86199275-chr11:86282316..86283020,3	MCF-7	breast:
6	chr11:86166851..86167817-chr11:86282247..86283482,8	MCF-7	breast:
7	chr11:86170199..86171040-chr11:86282276..86282814,2	MCF-7	breast:
8	chr11:86169916..86172612-chr11:86280492..86283245,2	MCF-7	breast:

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10792857	0.92[ASN][1000 genomes]
rs10792858	0.82[ASN][1000 genomes]
rs10898501	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1350478	0.89[ASN][1000 genomes]
rs1824279	0.94[ASN][1000 genomes]
rs1945036	0.99[ASN][1000 genomes]
rs34868765	0.89[ASN][1000 genomes]
rs4144867	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4391846	0.99[ASN][1000 genomes]
rs4944594	0.96[ASN][1000 genomes]
rs4944596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944597	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127944	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130902	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86263400-86288200	Weak transcription	Aorta	Aorta
2	chr11:86271000-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86271000-86285400	Weak transcription	Right Atrium	heart
4	chr11:86271000-86285600	Weak transcription	Right Ventricle	heart
5	chr11:86271000-86291200	Weak transcription	Gastric	stomach
6	chr11:86272400-86285600	Weak transcription	Psoas Muscle	Psoas
7	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
9	chr11:86277400-86287400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:86277400-86287600	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:86277400-86289400	Weak transcription	Brain Anterior Caudate	brain
12	chr11:86278600-86283000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86279000-86285200	Weak transcription	Hela-S3	cervix
14	chr11:86279000-86285600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86279000-86289000	Weak transcription	NHEK	skin
16	chr11:86279400-86285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:86279400-86285600	Weak transcription	Fetal Stomach	stomach
18	chr11:86279400-86285600	Weak transcription	Ovary	ovary
19	chr11:86279800-86282800	Weak transcription	Stomach Mucosa	stomach
20	chr11:86279800-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:86279800-86288000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:86280000-86285600	Weak transcription	Pancreas	Pancrea
23	chr11:86280600-86285600	Weak transcription	Left Ventricle	heart
24	chr11:86280800-86282800	Enhancers	A549	lung
25	chr11:86281000-86283600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:86281200-86283400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:86281400-86289200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:86281800-86283000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:86281800-86285000	Weak transcription	HUVEC	blood vessel
30	chr11:86282000-86283000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:86282000-86285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:86282000-86285800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:86282000-86286000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:86282000-86288200	Weak transcription	Colonic Mucosa	Colon
35	chr11:86282000-86288400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:86282200-86282600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:86282200-86283200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:86282200-86285600	Weak transcription	Spleen	Spleen
39	chr11:86282400-86283000	Enhancers	Lung	lung
40	chr11:86282400-86285800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:86282400-86287600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links