Variant report

Variant	rs4144867
Chromosome Location	chr11:86286401-86286402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86285976..86287836-chr11:86291866..86294445,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792857	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[ASN][1000 genomes]
rs10792858	0.81[ASN][1000 genomes]
rs10898501	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287767	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1350478	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs1458382	0.95[JPT][hapmap]
rs17211115	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1824279	0.94[ASN][1000 genomes]
rs1945036	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945143	0.91[CHB][hapmap]
rs34868765	0.88[ASN][1000 genomes]
rs4391846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943946	0.95[JPT][hapmap]
rs4944594	0.96[ASN][1000 genomes]
rs4944595	0.95[JPT][hapmap]
rs4944596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4944597	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7103271	0.95[JPT][hapmap]
rs7109521	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7127944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7130902	0.81[ASN][1000 genomes]
rs7940192	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7951185	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1810341	chr11:86282679-86286641	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1814476	chr11:86282679-86286641	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv555667	chr11:86282680-86286401	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv555668	chr11:86282680-86286503	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv555669	chr11:86282680-86286590	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv555670	chr11:86282680-86286641	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3463631	chr11:86284104-86288702	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3463675	chr11:86285251-86287087	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3498293	chr11:86285433-86287994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv555671	chr11:86285825-86286641	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3498299	chr11:86285852-86286836	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3463686	chr11:86285854-86286831	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv471753	chr11:86285862-86286787	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3498298	chr11:86285863-86286805	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3498294	chr11:86285874-86286760	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3463697	chr11:86285885-86286797	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3463664	chr11:86285898-86286792	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3463642	chr11:86285901-86286750	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3498295	chr11:86285902-86286773	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3498292	chr11:86285903-86286772	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3463653	chr11:86285948-86286727	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3498296	chr11:86285958-86286725	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3463708	chr11:86285962-86286723	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3498300	chr11:86285962-86286723	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv10076	chr11:86285969-86286746	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv555672	chr11:86285994-86286503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv555673	chr11:86285994-86286590	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv555674	chr11:86285994-86286641	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv555675	chr11:86285994-86288287	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv555676	chr11:86285994-86288584	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv555677	chr11:86285994-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv555679	chr11:86286045-86286641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv555680	chr11:86286096-86286641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv555681	chr11:86286096-86288584	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv555682	chr11:86286147-86288287	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv555683	chr11:86286147-86288584	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv555684	chr11:86286341-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86263400-86288200	Weak transcription	Aorta	Aorta
2	chr11:86271000-86291200	Weak transcription	Gastric	stomach
3	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
5	chr11:86277400-86287400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:86277400-86287600	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:86277400-86289400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:86279000-86289000	Weak transcription	NHEK	skin
9	chr11:86279800-86288000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:86281400-86289200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:86282000-86288200	Weak transcription	Colonic Mucosa	Colon
12	chr11:86282000-86288400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:86282400-86287600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:86283400-86289400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:86283400-86289400	Weak transcription	Stomach Mucosa	stomach
16	chr11:86283600-86288200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:86285000-86288800	Enhancers	HUVEC	blood vessel
18	chr11:86285400-86286800	Enhancers	NHDF-Ad	bronchial
19	chr11:86285400-86287000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:86285400-86288400	Enhancers	A549	lung
21	chr11:86285400-86288800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:86285400-86288800	Enhancers	Right Atrium	heart
23	chr11:86285600-86288600	Enhancers	Spleen	Spleen
24	chr11:86285600-86288800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:86285600-86289400	Enhancers	NH-A	brain
26	chr11:86285600-86290600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr11:86285800-86286600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:86285800-86287000	Weak transcription	Hela-S3	cervix
29	chr11:86285800-86287000	Enhancers	Osteobl	bone
30	chr11:86285800-86287400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:86285800-86287400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:86285800-86287600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:86286000-86286600	Enhancers	HMEC	breast
34	chr11:86286000-86287200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:86286000-86287200	Weak transcription	Right Ventricle	heart
36	chr11:86286000-86287600	Weak transcription	Adipose Nuclei	Adipose
37	chr11:86286000-86287600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:86286000-86288200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:86286000-86288400	Enhancers	Stomach Smooth Muscle	stomach
40	chr11:86286000-86289000	Weak transcription	HSMMtube	muscle
41	chr11:86286000-86299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:86286200-86286600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:86286200-86286600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:86286200-86286800	Weak transcription	Fetal Stomach	stomach
45	chr11:86286200-86287400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:86286200-86287400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:86286200-86287400	Weak transcription	Left Ventricle	heart
48	chr11:86286200-86287400	Weak transcription	Lung	lung
49	chr11:86286200-86287400	Weak transcription	Ovary	ovary
50	chr11:86286200-86287400	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links