Variant report

Variant	rs7951185
Chromosome Location	chr11:86281369-86281370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86174300..86177021-chr11:86280840..86283667,2	MCF-7	breast:
2	chr11:86168251..86170470-chr11:86280269..86282834,2	MCF-7	breast:
3	chr11:86169916..86172612-chr11:86280492..86283245,2	MCF-7	breast:
4	chr11:86281178..86281704-chr11:86529595..86530161,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10792858	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898500	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898501	0.95[JPT][hapmap]
rs12287767	0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes]
rs1458382	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17211115	0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[ASN][1000 genomes]
rs1945036	0.95[JPT][hapmap]
rs1945146	0.86[MEX][hapmap]
rs4144867	0.95[JPT][hapmap]
rs4391846	0.95[JPT][hapmap]
rs4943946	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944594	0.80[ASN][1000 genomes]
rs4944595	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs4944596	0.95[JPT][hapmap]
rs7103271	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7109521	0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7109555	0.83[ASN][1000 genomes]
rs7126810	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7127944	0.95[JPT][hapmap]
rs7130902	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924879	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86263400-86288200	Weak transcription	Aorta	Aorta
2	chr11:86271000-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86271000-86285400	Weak transcription	Right Atrium	heart
4	chr11:86271000-86285600	Weak transcription	Right Ventricle	heart
5	chr11:86271000-86291200	Weak transcription	Gastric	stomach
6	chr11:86272400-86285600	Weak transcription	Psoas Muscle	Psoas
7	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
9	chr11:86277200-86282400	Weak transcription	Lung	lung
10	chr11:86277400-86287400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:86277400-86287600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:86277400-86289400	Weak transcription	Brain Anterior Caudate	brain
13	chr11:86278200-86282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:86278600-86283000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:86279000-86281400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:86279000-86285200	Weak transcription	Hela-S3	cervix
17	chr11:86279000-86285600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:86279000-86289000	Weak transcription	NHEK	skin
19	chr11:86279400-86285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:86279400-86285600	Weak transcription	Fetal Stomach	stomach
21	chr11:86279400-86285600	Weak transcription	Ovary	ovary
22	chr11:86279800-86282800	Weak transcription	Stomach Mucosa	stomach
23	chr11:86279800-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:86279800-86288000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:86280000-86285600	Weak transcription	Pancreas	Pancrea
26	chr11:86280200-86282000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:86280600-86285600	Weak transcription	Left Ventricle	heart
28	chr11:86280800-86282400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:86280800-86282800	Enhancers	A549	lung
30	chr11:86281000-86281400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:86281000-86281800	Enhancers	HUVEC	blood vessel
32	chr11:86281000-86283600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr11:86281200-86281400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:86281200-86282000	Enhancers	Colonic Mucosa	Colon
35	chr11:86281200-86282000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr11:86281200-86282000	Enhancers	Stomach Smooth Muscle	stomach
37	chr11:86281200-86282200	Enhancers	Fetal Intestine Large	intestine
38	chr11:86281200-86283400	Enhancers	Sigmoid Colon	Sigmoid Colon

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