Variant report
| Variant | rs7943094 |
|---|---|
| Chromosome Location | chr11:93628219-93628220 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1032934 | 1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1032935 | 0.81[ASN][1000 genomes] |
| rs10501811 | 0.83[JPT][hapmap] |
| rs11020587 | 1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12270580 | 0.87[ASN][1000 genomes] |
| rs1401184 | 1.00[CEU][hapmap] |
| rs2203793 | 1.00[CEU][hapmap] |
| rs2460065 | 1.00[CEU][hapmap] |
| rs2462733 | 1.00[CEU][hapmap] |
| rs2462735 | 1.00[CEU][hapmap] |
| rs2462758 | 1.00[CEU][hapmap] |
| rs28892278 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28893204 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4590831 | 0.81[ASN][1000 genomes] |
| rs57212924 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57637135 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58998795 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59979631 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66863695 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs67224452 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs68147982 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7102891 | 0.81[ASN][1000 genomes] |
| rs7931748 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7932631 | 0.81[ASN][1000 genomes] |
| rs978950 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | nsv898182 | chr11:93381845-93637462 | Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 108 gene(s) | inside rSNPs | diseases |
| 3 | nsv508650 | chr11:93609010-93713576 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93628200-93628800 | Bivalent/Poised TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
