Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101086186..101088013-chr11:101088184..101090911,2	MCF-7	breast:
2	chr11:100998136..101000438-chr11:101087310..101089950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501974	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750599	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791448	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791454	0.81[AMR][1000 genomes]
rs10895075	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895076	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895078	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895083	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224629	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224642	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11224654	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11224656	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12275587	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2000743	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2156522	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4595509	0.80[AMR][1000 genomes]
rs4754742	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7931365	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7948090	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs948748	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary
2	chr11:101087200-101088800	Weak transcription	Liver	Liver

Quick Search: