Variant report

Variant	rs7945893
Chromosome Location	chr11:64167578-64167579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:64167511-64168741	K562	blood:	n/a	n/a
2	JUND	chr11:64167506-64168211	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:64166187..64170044-chr11:64170239..64173432,3	K562	blood:
2	chr11:64121716..64124578-chr11:64166174..64168592,2	MCF-7	breast:
3	chr11:64140769..64142599-chr11:64166944..64169881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231680	TF binding region
ENSG00000168071	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11824915	1.00[AMR][1000 genomes]
rs11824951	1.00[AMR][1000 genomes]
rs11825509	1.00[AMR][1000 genomes]
rs11826429	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56700967	1.00[AMR][1000 genomes]
rs73486118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
2	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64154000-64167600	Weak transcription	Right Atrium	heart
2	chr11:64163800-64168400	Weak transcription	Ovary	ovary
3	chr11:64164000-64168000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:64164000-64169000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:64164000-64170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:64164200-64167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64164400-64167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:64164400-64167600	Weak transcription	HSMM	muscle
9	chr11:64164400-64171800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:64165800-64171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:64166000-64167600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:64167200-64167800	Enhancers	Hela-S3	cervix
13	chr11:64167200-64168200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:64167200-64168200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:64167400-64167600	Enhancers	Psoas Muscle	Psoas
16	chr11:64167400-64167800	Enhancers	Stomach Mucosa	stomach
17	chr11:64167400-64167800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
18	chr11:64167400-64167800	Enhancers	K562	blood
19	chr11:64167400-64168000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:64167400-64168000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:64167400-64168000	Enhancers	Adipose Nuclei	Adipose
22	chr11:64167400-64168000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:64167400-64168200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:64167400-64168200	Enhancers	Placenta	Placenta
25	chr11:64167400-64168200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr11:64167400-64168200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr11:64167400-64168200	Enhancers	NHEK	skin
28	chr11:64167400-64168400	Enhancers	Spleen	Spleen
29	chr11:64167400-64168400	Enhancers	HMEC	breast

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