Variant report

Variant	rs11825509
Chromosome Location	chr11:64200072-64200073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:64197420-64206402..11:64501239-64517861	GM12878	blood:
2	11:64197420-64206402..11:64402707-64415880	H1-hESC	embryonic stem cell:	embryo
3	11:64197420-64206402..11:64489786-64499245	GM12878	blood:
4	chr11:64199979..64202076-chr11:64202502..64205332,2	MCF-7	breast:
5	11:64197420-64206402..11:64415880-64426617	Hela-S3	cervix:
6	11:64197420-64206402..11:64523887-64530985	Hela-S3	cervix:
7	11:64197420-64206402..11:64356433-64395036	K562	blood:
8	chr11:64200040..64202027-chr11:64300129..64302413,2	K562	blood:
9	11:64197420-64206402..11:64426650-64437729	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP003774.4.1-1	chr11:64199932-64200142	XLOC_009158
2	lnc-AP003774.4.1-1	chr11:64199932-64200142	ENSG00000231492.2

No data

No data

Variant related genes	Relation type
ENSG00000237410	Chromatin interaction
ENSG00000197891	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000068976	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11824915	1.00[AMR][1000 genomes]
rs11824951	1.00[AMR][1000 genomes]
rs11826429	1.00[AMR][1000 genomes]
rs56700967	1.00[AMR][1000 genomes]
rs73486118	1.00[AMR][1000 genomes]
rs7945893	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64197200-64201600	Weak transcription	Fetal Brain Male	brain
2	chr11:64198200-64203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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