Variant report

Variant	rs7946742
Chromosome Location	chr11:65654478-65654479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65651325..65654107-chr11:65654178..65656416,6	MCF-7	breast:
2	chr11:65650800..65661192-chr11:65726307..65736419,31	MCF-7	breast:
3	chr11:65652640..65657924-chr11:65769844..65772901,4	MCF-7	breast:
4	chr11:65381281..65383865-chr11:65653428..65656647,3	MCF-7	breast:
5	chr11:65653872..65655439-chr11:65819270..65821819,2	K562	blood:
6	chr11:65650579..65663306-chr11:65677153..65690311,39	MCF-7	breast:
7	chr11:65343312..65345815-chr11:65654213..65655812,2	MCF-7	breast:
8	chr11:65478350..65482284-chr11:65653854..65660529,8	K562	blood:
9	chr11:65429800..65432139-chr11:65653071..65655699,2	MCF-7	breast:
10	chr11:65485673..65489789-chr11:65654054..65658887,6	K562	blood:
11	chr11:65477188..65481209-chr11:65654091..65661409,11	K562	blood:
12	chr11:65654406..65656554-chr11:65818022..65819720,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175334	Chromatin interaction
ENSG00000173442	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000172922	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57225106	1.00[EUR][1000 genomes]
rs7103516	1.00[EUR][1000 genomes]
rs7119832	1.00[EUR][1000 genomes]
rs7122843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122964	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128298	1.00[EUR][1000 genomes]
rs7950010	0.83[MKK][hapmap];1.00[TSI][hapmap]
rs9919545	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv530622	chr11:65649068-65661361	Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65641600-65655000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:65641600-65655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:65641600-65655000	Weak transcription	Right Atrium	heart
4	chr11:65649000-65655000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:65649000-65655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:65649200-65654600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:65649400-65654600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:65649600-65654600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:65649600-65654600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:65649600-65654600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:65649600-65654600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:65649600-65654800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:65650000-65654600	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr11:65650000-65654600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:65650000-65654600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:65650000-65654800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr11:65650000-65654800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:65650200-65655000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:65651600-65655000	Genic enhancers	Dnd41	blood
20	chr11:65651800-65654800	Genic enhancers	NHLF	lung
21	chr11:65651800-65655000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:65651800-65655200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:65652000-65654600	Weak transcription	Liver	Liver
24	chr11:65652000-65655000	Genic enhancers	Fetal Intestine Small	intestine
25	chr11:65652000-65655200	Weak transcription	Aorta	Aorta
26	chr11:65652400-65654800	Genic enhancers	HepG2	liver
27	chr11:65652400-65655000	Genic enhancers	Duodenum Mucosa	Duodenum
28	chr11:65652600-65654600	Strong transcription	Primary T cells from cord blood	blood
29	chr11:65652600-65654600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:65652600-65654600	Strong transcription	Brain Anterior Caudate	brain
31	chr11:65652600-65654600	Strong transcription	Brain Substantia Nigra	brain
32	chr11:65652600-65654600	Strong transcription	Esophagus	oesophagus
33	chr11:65652600-65654600	Strong transcription	Thymus	Thymus
34	chr11:65652600-65654600	Strong transcription	Spleen	Spleen
35	chr11:65652600-65654800	Strong transcription	Brain Cingulate Gyrus	brain
36	chr11:65652600-65654800	Strong transcription	Fetal Stomach	stomach
37	chr11:65652600-65654800	Genic enhancers	Stomach Smooth Muscle	stomach
38	chr11:65652600-65655000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:65652800-65654600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:65652800-65654600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:65652800-65655000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:65652800-65655000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr11:65652800-65655000	Strong transcription	Fetal Thymus	thymus
44	chr11:65652800-65655000	Weak transcription	Pancreas	Pancrea
45	chr11:65653000-65654600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:65653000-65654600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:65653000-65654600	Strong transcription	Right Ventricle	heart
48	chr11:65653200-65654600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:65653400-65654600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:65653400-65655000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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