Variant report

Variant	rs9919545
Chromosome Location	chr11:65670255-65670256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65669194-65671270	U87	brain:	n/a	n/a
2	POLR2A	chr11:65669294-65671270	U87	brain:	n/a	n/a
3	NR2F2	chr11:65670247-65671230	K562	blood:	n/a	n/a
4	POLR2A	chr11:65670203-65671448	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr11:65670250-65671112	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr11:65670218-65670929	IMR90	lung:	n/a	n/a
7	POLR2A	chr11:65654850-65671347	PANC-1	pancreas:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65546756..65549287-chr11:65665686..65670324,5	K562	blood:
2	chr11:65665429..65670947-chr11:65725068..65731705,14	MCF-7	breast:
3	chr11:65428811..65431023-chr11:65669064..65671228,2	K562	blood:
4	chr11:65630101..65632052-chr11:65668031..65671023,2	MCF-7	breast:

No data

Variant related genes	Relation type
FOSL1	TF binding region
ENSG00000173039	Chromatin interaction
ENSG00000175827	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000254470	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57225106	1.00[EUR][1000 genomes]
rs7103516	1.00[EUR][1000 genomes]
rs7119832	1.00[EUR][1000 genomes]
rs7128298	1.00[EUR][1000 genomes]
rs7946742	1.00[EUR][1000 genomes]
rs7950010	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv39194	chr11:65665530-65672457	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65668000-65682600	Weak transcription	Aorta	Aorta
2	chr11:65668200-65672000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:65668200-65672800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65668400-65670400	Enhancers	A549	lung
5	chr11:65668400-65670400	Enhancers	HepG2	liver
6	chr11:65668400-65671400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:65668400-65671400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:65668400-65671400	Enhancers	K562	blood
9	chr11:65668400-65671600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:65668400-65671800	Enhancers	NHDF-Ad	bronchial
11	chr11:65668400-65672000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:65668400-65672600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:65668600-65670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:65668600-65670400	Weak transcription	Pancreas	Pancrea
15	chr11:65668600-65670400	Enhancers	Hela-S3	cervix
16	chr11:65668600-65671600	Enhancers	HMEC	breast
17	chr11:65668600-65671600	Enhancers	NH-A	brain
18	chr11:65668600-65671600	Enhancers	Osteobl	bone
19	chr11:65668600-65671800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:65668800-65671600	Enhancers	NHEK	skin
21	chr11:65669000-65670400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:65669000-65670400	Enhancers	HSMM	muscle
23	chr11:65669000-65670600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:65669000-65671400	Enhancers	Fetal Thymus	thymus
25	chr11:65669000-65671600	Enhancers	NHLF	lung
26	chr11:65669200-65671200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:65669200-65671200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr11:65669400-65670400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:65669400-65670400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:65669400-65671000	Enhancers	Placenta	Placenta
31	chr11:65669400-65671400	Enhancers	HUVEC	blood vessel
32	chr11:65669600-65670400	Enhancers	HSMMtube	muscle
33	chr11:65669800-65670800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
34	chr11:65669800-65671200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:65669800-65671400	Enhancers	Primary hematopoietic stem cells	blood
36	chr11:65669800-65671600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:65670000-65670400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:65670000-65670400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:65670000-65671000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr11:65670000-65671000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:65670000-65671800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:65670200-65670400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr11:65670200-65670400	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr11:65670200-65670400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:65670200-65671000	Enhancers	Esophagus	oesophagus

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