Variant report

Variant	rs7947929
Chromosome Location	chr11:65625191-65625192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:65624256-65626280	HepG2	liver:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
2	POLR2A	chr11:65623326-65628516	K562	blood:	n/a	n/a
3	POLR2A	chr11:65624266-65626013	MCF-7	breast:	n/a	n/a
4	CTCFL	chr11:65625144-65625350	K562	blood:	n/a	n/a
5	TAF1	chr11:65625185-65626173	MCF-7	breast:	n/a	n/a
6	HA-E2F1	chr11:65624960-65626044	Hela-S3	cervix:	n/a	chr11:65625791-65625803 chr11:65625409-65625418 chr11:65625248-65625255 chr11:65625504-65625516
7	EP300	chr11:65624932-65625992	SK-N-SH_RA	brain:	n/a	chr11:65625187-65625203 chr11:65625628-65625644 chr11:65625187-65625196 chr11:65625057-65625073 chr11:65625056-65625072 chr11:65625035-65625051 chr11:65625861-65625877
8	THAP1	chr11:65625190-65625901	K562	blood:	n/a	n/a
9	HA-E2F1	chr11:65624516-65626263	MCF-7	breast:	n/a	chr11:65625791-65625803 chr11:65624854-65624863 chr11:65625409-65625418 chr11:65625248-65625255 chr11:65624722-65624731 chr11:65625504-65625516
10	POLR2A	chr11:65624504-65626425	NB4	blood:	n/a	n/a
11	JUND	chr11:65624646-65626103	MCF-7	breast:	n/a	n/a
12	POLR2A	chr11:65617944-65626197	K562	blood:	n/a	n/a
13	SIN3AK20	chr11:65624991-65625805	H1-hESC	embryonic stem cell:	n/a	n/a
14	HEY1	chr11:65624312-65626436	K562	blood:	n/a	chr11:65625188-65625203 chr11:65625757-65625772 chr11:65624828-65624843
15	CTCF	chr11:65625091-65625410	K562	blood:	n/a	n/a
16	GABPA	chr11:65624286-65626000	K562	blood:	n/a	chr11:65624853-65624864 chr11:65624523-65624532 chr11:65625323-65625337 chr11:65625408-65625419 chr11:65625512-65625521 chr11:65624853-65624862 chr11:65625408-65625417 chr11:65625405-65625419 chr11:65625408-65625422 chr11:65624722-65624731 chr11:65625320-65625334 chr11:65624850-65624864
17	HCFC1	chr11:65623229-65629451	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr11:65617092-65633870	K562	blood:	n/a	n/a
19	POLR2A	chr11:65623808-65626436	PFSK-1	brain:	n/a	n/a
20	NFATC1	chr11:65623447-65625282	GM12878	blood:	n/a	n/a
21	MAX	chr11:65624318-65626312	Hela-S3	cervix:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
22	ETS1	chr11:65625125-65625933	GM12878	blood:	n/a	chr11:65625705-65625720 chr11:65625761-65625772 chr11:65625345-65625358 chr11:65625737-65625750 chr11:65625187-65625198 chr11:65625470-65625481 chr11:65625303-65625314 chr11:65625710-65625719 chr11:65625300-65625311 chr11:65625426-65625437 chr11:65625342-65625353 chr11:65625828-65625841 chr11:65625669-65625676
23	ZNF143	chr11:65624824-65628112	K562	blood:	n/a	chr11:65625465-65625483 chr11:65625821-65625839 chr11:65625425-65625435 chr11:65625773-65625791 chr11:65625757-65625767 chr11:65625463-65625473 chr11:65625828-65625837 chr11:65626696-65626714 chr11:65627928-65627938 chr11:65627521-65627540 chr11:65625063-65625073
24	TAF1	chr11:65624375-65626143	ECC-1	luminal epithelium:	n/a	n/a
25	MXI1	chr11:65624350-65625197	HepG2	liver:	n/a	chr11:65624499-65624508
26	SIN3AK20	chr11:65623944-65626089	MCF-7	breast:	n/a	n/a
27	POLR2A	chr11:65623812-65628919	HUVEC	blood vessel:	n/a	n/a
28	MXI1	chr11:65624270-65626274	GM12878	blood:	n/a	chr11:65624499-65624508
29	MYC	chr11:65624329-65626294	K562	blood:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
30	NFIC	chr11:65625182-65626856	GM12878	blood:	n/a	n/a
31	EP300	chr11:65624831-65625383	ECC-1	luminal epithelium:	n/a	chr11:65625187-65625203 chr11:65625187-65625196 chr11:65625057-65625073 chr11:65625056-65625072 chr11:65625035-65625051
32	TAF1	chr11:65624974-65628641	H1-neurons	neurons:	n/a	n/a
33	PML	chr11:65625097-65626206	MCF-7	breast:	n/a	n/a
34	TCF12	chr11:65624458-65626077	ECC-1	luminal epithelium:	n/a	chr11:65625082-65625092
35	ELF1	chr11:65624049-65626168	MCF-7	breast:	n/a	chr11:65625761-65625770 chr11:65625630-65625639
36	MAX	chr11:65624166-65625368	ECC-1	luminal epithelium:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
37	TAF1	chr11:65624694-65626021	ECC-1	luminal epithelium:	n/a	n/a
38	MYC	chr11:65624325-65626324	MCF10A-Er-Src	breast:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
39	TAL1	chr11:65624321-65625804	K562	blood:	n/a	n/a
40	POLR2A	chr11:65624455-65628614	Raji	blood:	n/a	n/a
41	BCLAF1	chr11:65624335-65625273	GM12878	blood:	n/a	chr11:65625098-65625111 chr11:65624826-65624839 chr11:65625187-65625200
42	MAX	chr11:65624339-65626311	A549	lung:	n/a	chr11:65624498-65624507 chr11:65624497-65624508 chr11:65624496-65624509 chr11:65624435-65624445 chr11:65624498-65624507
43	JUND	chr11:65624994-65625737	H1-hESC	embryonic stem cell:	n/a	n/a
44	FOXM1	chr11:65624103-65628727	GM12878	blood:	n/a	n/a
45	EP300	chr11:65625036-65625298	GM12878	blood:	n/a	chr11:65625187-65625203 chr11:65625187-65625196 chr11:65625057-65625073 chr11:65625056-65625072
46	POLR2A	chr11:65624203-65625801	SK-N-SH	brain:	n/a	n/a
47	ZBTB33	chr11:65624859-65625266	A549	lung:	n/a	n/a
48	POLR2A	chr11:65624020-65626027	GM12878	blood:	n/a	n/a
49	E2F4	chr11:65624674-65626040	K562	blood:	n/a	chr11:65625791-65625803 chr11:65624854-65624863 chr11:65625409-65625418 chr11:65625248-65625255 chr11:65625790-65625801 chr11:65625315-65625330 chr11:65624722-65624731 chr11:65625504-65625516
50	ZBTB7A	chr11:65624954-65625755	ECC-1	luminal epithelium:	n/a	chr11:65625433-65625440

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65625153-65625203	HUVEC	blood vessel:	n/a
2	chr11:65625153-65625203	HepG2	liver:	n/a
3	chr11:65625153-65625203	HCPEpiC	choroid plexus:	n/a
4	chr11:65625153-65625203	A549	lung:	n/a
5	chr11:65625153-65625203	HL-60	blood:	n/a
6	chr11:65625153-65625203	GM06990	blood:	n/a
7	chr11:65625153-65625203	GM12891	blood:	n/a
8	chr11:65625153-65625203	AoSMC	blood vessel:	n/a
9	chr11:65625153-65625203	SK-N-SH	brain:	n/a
10	chr11:65625153-65625203	PANC-1	pancreas:	n/a
11	chr11:65625153-65625203	Jurkat	blood:	n/a
12	chr11:65625153-65625203	RPTEC	kidney:	n/a
13	chr11:65625153-65625203	SK-N-MC	brain:	n/a
14	chr11:65625153-65625203	AG09319	gingival:	n/a
15	chr11:65625153-65625203	IMR90	lung:	fetal
16	chr11:65625153-65625203	U87	brain:	n/a
17	chr11:65625153-65625203	HNPCEpiC	eye:	n/a
18	chr11:65625153-65625203	Caco-2	colon:	n/a
19	chr11:65625153-65625203	MCF10A-Er-Src	breast:	n/a
20	chr11:65625153-65625203	NH-A	brain:	n/a
21	chr11:65625153-65625203	GM12878	blood:	n/a
22	chr11:65625153-65625203	BJ	skin:	n/a
23	chr11:65625153-65625203	NB4	blood:	n/a
24	chr11:65625153-65625203	NT2-D1	testis:	n/a
25	chr11:65625153-65625203	HCT-116	colon:	n/a
26	chr11:65625153-65625203	Hela-S3	cervix:	n/a
27	chr11:65625153-65625203	GM19239	blood:	n/a
28	chr11:65625153-65625203	CMK	blood:	n/a
29	chr11:65625153-65625203	SK-N-SH_RA	brain:	n/a
30	chr11:65625153-65625203	AG10803	skin:	n/a
31	chr11:65625153-65625203	HIPEpiC	eye:	n/a
32	chr11:65625153-65625203	LNCaP	prostate:	n/a
33	chr11:65625153-65625203	HMEC	breast:	n/a
34	chr11:65625153-65625203	GM12892	blood:	n/a
35	chr11:65625153-65625203	NHDF-neo	bronchial:	n/a
36	chr11:65625153-65625203	HCM	heart:	n/a
37	chr11:65625153-65625203	AG04450	lung:	fetal
38	chr11:65625153-65625203	AG09309	skin:	n/a
39	chr11:65625153-65625203	HEK293	kidney:	embryo
40	chr11:65625153-65625203	ECC-1	luminal epithelium:	n/a
41	chr11:65625153-65625203	MCF-7	breast:	n/a
42	chr11:65625153-65625203	HRPEpiC	eye:	n/a
43	chr11:65625153-65625203	PrEC	prostate:	n/a
44	chr11:65625153-65625203	ovcar-3	ovarian:	n/a
45	chr11:65625153-65625203	HCF	heart:	n/a
46	chr11:65625153-65625203	K562	blood:	n/a
47	chr11:65625153-65625203	BE2_C	brain:	n/a
48	chr11:65625153-65625203	HEEpiC	esophagus:	n/a
49	chr11:65625153-65625203	PFSK-1	brain:	n/a
50	chr11:65625153-65625203	HAEpiC	amniotic membrane:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:65625132..65628506-chr11:66035169..66036764,3	K562	blood:
2	chr11:65624916..65625735-chr14:92302236..92302911,2	Hela-S3	cervix:
3	chr1:16840526..16841102-chr11:65625175..65626029,2	Hela-S3	cervix:
4	chr11:65381104..65384699-chr11:65624758..65628552,6	MCF-7	breast:
5	chr11:65601147..65603673-chr11:65623876..65625928,3	MCF-7	breast:
6	chr11:65472429..65485450-chr11:65615794..65629774,38	K562	blood:
7	chr11:65624298..65626384-chr11:66036037..66037653,2	MCF-7	breast:
8	chr11:65624293..65627593-chr11:65778197..65781174,3	MCF-7	breast:
9	chr11:65461869..65464366-chr11:65623666..65626207,3	MCF-7	breast:
10	chr11:65624058..65625682-chr6:32937606..32939507,2	K562	blood:
11	chr11:64544371..64546795-chr11:65624012..65625591,2	K562	blood:
12	chr11:65428959..65430837-chr11:65624739..65627866,4	K562	blood:
13	chr11:65624744..65625733-chr11:65729067..65729662,2	MCF-7	breast:
14	chr11:65263752..65266788-chr11:65624237..65626722,4	K562	blood:
15	chr11:65428923..65432488-chr11:65624731..65627563,6	MCF-7	breast:
16	chr11:65623212..65627104-chr11:65728021..65730947,7	MCF-7	breast:
17	chr11:65429132..65432605-chr11:65622916..65626202,6	MCF-7	breast:
18	chr11:502665..504183-chr11:65623020..65625621,2	K562	blood:
19	chr11:65545624..65552162-chr11:65622017..65629334,15	K562	blood:
20	chr11:65625072..65626937-chr11:65835477..65837832,2	K562	blood:
21	chr11:65336983..65338518-chr11:65624191..65626684,2	MCF-7	breast:
22	chr11:65624341..65625267-chr6:34664302..34664857,2	Hela-S3	cervix:
23	chr11:65624135..65626330-chr16:2009225..2011053,2	K562	blood:
24	chr11:65401684..65404221-chr11:65623185..65625956,3	K562	blood:
25	chr11:65622510..65630779-chr11:65675126..65689187,23	MCF-7	breast:
26	chr11:65482499..65489390-chr11:65622947..65628870,15	MCF-7	breast:
27	chr11:65423887..65432217-chr11:65622069..65628988,12	K562	blood:
28	chr11:65405500..65407998-chr11:65624581..65626384,2	K562	blood:
29	chr11:65485004..65489716-chr11:65621545..65626984,9	K562	blood:
30	chr11:65336222..65339291-chr11:65623626..65626992,4	K562	blood:
31	chr11:65408028..65411075-chr11:65624392..65627555,3	K562	blood:
32	chr11:65624197..65625879-chr11:65767979..65770257,2	MCF-7	breast:
33	chr11:65624805..65625720-chr12:125398909..125399816,2	Hela-S3	cervix:
34	chr11:65263752..65266249-chr11:65624237..65626407,2	K562	blood:
35	chr11:65623413..65628719-chr11:65768360..65773657,11	MCF-7	breast:
36	chr11:65624857..65625763-chr6:116891788..116892734,2	Hela-S3	cervix:
37	chr11:65624882..65627968-chr11:66034504..66038316,6	K562	blood:
38	chr11:65556531..65558931-chr11:65624353..65626096,2	K562	blood:
39	chr11:65377447..65384699-chr11:65622853..65629192,15	MCF-7	breast:
40	chr11:65625083..65627509-chr6:26216326..26218082,2	MCF-7	breast:
41	chr11:65485735..65490975-chr11:65621882..65626984,8	K562	blood:
42	chr11:65624126..65626253-chr11:66048758..66051466,2	K562	blood:
43	chr11:65545480..65548295-chr11:65624014..65629369,5	MCF-7	breast:
44	chr11:65625038..65625631-chr11:105947974..105948808,2	Hela-S3	cervix:
45	chr11:65545624..65551607-chr11:65624049..65629334,14	K562	blood:
46	chr11:65189338..65192942-chr11:65624454..65628332,4	K562	blood:
47	chr11:65623999..65626428-chr11:65787537..65789052,2	MCF-7	breast:
48	chr11:65622512..65626950-chr11:65664131..65668520,8	MCF-7	breast:
49	chr11:65381645..65384488-chr11:65623214..65626222,3	K562	blood:
50	chr11:65623430..65625691-chr11:65837839..65839866,2	K562	blood:

Variant related genes	Relation type
CFL1	TF binding region
MUS81	TF binding region
CFL1	CpG island
MUS81	CpG island
ENSG00000111832	Chromatin interaction
ENSG00000023191	Chromatin interaction
ENSG00000165929	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000174903	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000174871	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000254762	Chromatin interaction
ENSG00000266041	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000255120	Chromatin interaction
ENSG00000172803	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000254867	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000213445	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000175827	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000272288	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000196821	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000175592	Chromatin interaction
ENSG00000239356	Chromatin interaction
ENSG00000206652	Chromatin interaction
ENSG00000140990	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000254470	Chromatin interaction
ENSG00000150991	Chromatin interaction
ENSG00000170242	Chromatin interaction
ENSG00000094916	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000175315	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000149313	Chromatin interaction
ENSG00000135486	Chromatin interaction
ENSG00000182359	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13817	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939212	0.81[ASN][1000 genomes]
rs4621	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs508548	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538394	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs545500	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs558114	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs630303	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs630755	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs633877	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635375	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs648732	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs652021	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs656040	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs665306	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs667555	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs668356	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679147	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7125986	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7947741	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897763	chr11:65613348-65644027	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
10	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
11	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
12	nsv897766	chr11:65624025-65644027	Transcr. at gene 5' and 3' Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7947929	SNX32	cis	Artery Tibial	GTEx
rs7947929	FIBP	Cis_1M	lymphoblastoid	RTeQTL
rs7947929	SNX32	cis	Esophagus Muscularis	GTEx
rs7947929	SNX32	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65623400-65625200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:65623600-65626000	Active TSS	HSMMtube	muscle
3	chr11:65623800-65625200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr11:65623800-65625200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
5	chr11:65623800-65625200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
6	chr11:65623800-65625600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:65623800-65628800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:65623800-65629200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:65624000-65625200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:65624000-65626000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:65624000-65627200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:65624000-65628600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr11:65624000-65628600	Active TSS	Lung	lung
14	chr11:65624000-65628800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr11:65624000-65628800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:65624000-65629000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:65624000-65629000	Active TSS	H9 Cell Line	embryonic stem cell
18	chr11:65624200-65626000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:65624200-65626000	Active TSS	Fetal Intestine Large	intestine
20	chr11:65624200-65626000	Active TSS	Fetal Kidney	kidney
21	chr11:65624200-65627000	Active TSS	Spleen	Spleen
22	chr11:65624200-65627200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:65624200-65628600	Active TSS	Right Ventricle	heart
24	chr11:65624200-65628600	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr11:65624200-65628800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:65624200-65628800	Active TSS	Gastric	stomach
27	chr11:65624200-65629000	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr11:65624200-65629000	Active TSS	Aorta	Aorta
29	chr11:65624200-65629000	Active TSS	Ovary	ovary
30	chr11:65624200-65629200	Active TSS	Small Intestine	intestine
31	chr11:65624400-65625200	Active TSS	Stomach Mucosa	stomach
32	chr11:65624400-65625800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr11:65624400-65626000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:65624400-65626000	Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr11:65624400-65626000	Active TSS	Primary monocytes fromperipheralblood	blood
36	chr11:65624400-65626000	Active TSS	Primary B cells from peripheral blood	blood
37	chr11:65624400-65626000	Active TSS	Primary T cells from cord blood	blood
38	chr11:65624400-65626000	Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr11:65624400-65626000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:65624400-65626000	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr11:65624400-65626000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:65624400-65626000	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr11:65624400-65626000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:65624400-65626000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr11:65624400-65626000	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr11:65624400-65626000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:65624400-65626000	Active TSS	Liver	Liver
48	chr11:65624400-65626000	Active TSS	Brain Anterior Caudate	brain
49	chr11:65624400-65626000	Active TSS	Brain Cingulate Gyrus	brain
50	chr11:65624400-65626000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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