Variant report

Variant	rs7950003
Chromosome Location	chr11:57759936-57759937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1113334	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1113335	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11601202	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11601223	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11601663	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11602442	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11605988	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11606464	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11608016	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12419176	0.87[EUR][1000 genomes]
rs12421773	0.85[EUR][1000 genomes]
rs12788836	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12790525	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs12792435	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12792638	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12801976	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12803905	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1376489	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs1397273	0.86[EUR][1000 genomes]
rs2089747	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34015013	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34563263	0.87[EUR][1000 genomes]
rs34594669	0.88[EUR][1000 genomes]
rs35163247	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35713433	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35742790	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36071925	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56055377	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs609154	0.84[EUR][1000 genomes]
rs61903966	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61903967	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61904009	0.81[ASN][1000 genomes]
rs61905309	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66813766	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7109912	0.87[EUR][1000 genomes]
rs7121128	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123570	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7123727	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7126334	0.92[EUR][1000 genomes]
rs714942	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7926878	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7929515	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930102	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs7930234	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7936212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs938011	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3510955	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3510957	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3510956	chr11:57754026-57762724	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv498759	chr11:57754444-57762114	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv18668	chr11:57755622-57761480	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3512188	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3512189	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv1805062	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv1809511	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv1814272	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv1814910	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv1813771	chr11:57756568-57767699	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3474287	chr11:57756676-57763574	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3474298	chr11:57756676-57763574	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57758800-57760000	Enhancers	HepG2	liver

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